Structure of PDB 7aso Chain j Binding Site BS01

Receptor Information

>7aso Chain j (length=60) Species: 1280 (Staphylococcus aureus)

PKMKTHRGAAKRVKRTASGQLKRSRAFTSHLFANKSTKQKRQLRKARLVS
KSDMKRVKQL

Ligand information

>7aso Chain Y (length=2720)

uuaaguuauuaagggcgcacgguggaugccuuggcacuagaagccaauga
aggacguuacuaacgacgauaugcuuuggggagcuguaaguaagcuuuga
uccagagauuuccgaauggggaaacccagcaugaguuaugucauguuauc
gauaugugaauacauagcauaucagaaggcacacccggagaacugaaaca
ucuuaguacccggaggaagagaaagaaaauucgauucccuuaguagcggc
gagcgaaacgggaagagcccaaaccaacaagcuugcuuguugggguugua
ggacacucuagaguuacaaaggacgacauuagacgaaucaucuggaaaga
ugaaucaaagaagguaauaauccuguagucgaaaauguugucucucuuga
guggauccugaguacgacggagcacgugaaauuccgucggaaucugggag
gaccaucuccuaaggcuaaauacucucuagugaccgauagugaaccagua
ccgugagggaaaggugaaaagcaccccggaaggggagugaaauagaaccu
gaaaccgugugcuuacaaguagucagagcccguuaaugggugauggcgug
ccuuuuguagaaugaaccggcgaguuacgauuugaugcaagguuaagcag
uaaauguggagccguagcgaaagcgagucugaauagggcguuuaguauuu
ggucguagacccgaaaccaggugaucuacccuuggucagguugaaguuca
gugaauggaggaccgaaccgacuuacguugaaaagugagcggaugaacug
aggguagcggagaaauuccaaucgaaccuggagauagcugguucucuccg
aaauagcuuuagggcuagccucaagugaugauuauuggagguagagcacu
guuuggacgaggccgaauucagacaaacuccgaaugccaauuaauuuaac
uugggagucagaacaugggugauaagguccguguucgaaagggaaacagc
ccagaccaccagcuaaggucccaaaauauauguuaaguggaaaaggaugu
ggcguugccacaacuagagucgagugacacugcgccgaaaauguaccggg
gcuaaacauauuaccgaagcuguggauuguccuuggacaaugguaggaga
gcguucuaagggcguugaagcaugaucguaaggacauguggagcgcuuag
aagugagaaugccggugugaguagcgaaagacgggugagaaucccgucca
ccgauugacuaagguuuccagaggaaggcucguccgcucuggguuagucg
gguccuaagcugaggccgacaggcguaggcgauggauaacagguugauau
uccuguaccaccuauaaucgauggggggacgcaguaggauagggaagcgu
uggauugcacgucuaagcaguaaggcugaguaauccgguacucgggcuga
gcugugauggggagaagaccgagucguugauuucacacugccgagaaaag
ccucuagauagaaaauaggugcccguaccgcaaaccgacacagguaguca
agaugagaauucuaaggugagcgagcgaacucucguuaaggaacucggca
aaaugaccccguaacuucgggagaaggggugcucuuuaggguuaacgccc
agaagagccgcagugaauaggcccaagcgacuguuuaucaaaaacacagg
ucucugcuaaaccguaaggugauguauaggggcugacgccugcccggugc
uggaagguuaagaggagugguuagcuucugcgaagcuacgaaucgaagcc
ccaguaaacggcggccguaacgguccuaagguagcgaaauuccuugucgg
guaaguuccgacccgcacgaaaggcguaacgauuugggcacugucucaac
gagagacucggugaaaucauaguaccugugaagaugcagguuacccgcga
caggacggaaagaccccguggagcuuuacuguagccugauauugaaauuc
ggcacagcuagcuguguuggcuuucuaacccgcaccacuuacgugguggg
agacagugucaagcgggcaguuugacuggggcggucgccuccuaaaaggu
aacggaggcgcucaaagguucccucagaaugguuggaaaucauucauaga
guguaaaggcauaagggagcuugacugcgagaccuacaagucgagcaggg
ucgaaagacggacuuagugauccggugguuccgcauggaagggccaucgc
ucaacggauaaaagcuaccccggggauaacaggcuuaucucccccaagag
uucacaucgacggggagguuuggcaccucgaugucggcucaucgcauccu
ggggcuguagucggucccaaggguugggcuguucgcccauuaaagcggua
cgcgagcuggguucagaacgucgugagacaguucggucccuauccgucgu
gggcguaggaaauuugagaggagcuguccuuaguacgagaggaccgggau
ggacauaccucugguguaccaguugucgugccaacggcauagcuggguag
cuauguguggacgggauaagugcugaaagcaucuaagcaugaagcccccc
ucaagaugagauuucccaacucgguuauaagaucccucaaagaugaugag
guuaauagguucgagguggaagcauggugacauguggagcugacgaauac
uaaucgaucgaagacuuaau

<<<<<<......<<<<<<<<<<<.....<<..<<<<<<<<<<<<<.....
.<<<<<<.((..((.>>>.....<<<<<<<..<<<))..)).>>>.....
>>>>>>>...>>>....<<<....>>><<<<<<<......>>>>>>>.<<
.<...................>..>>.>>....<<<<<......<.....
.>.......>>>>.>.........<<....>>...<<<<......<<...
..>>.....>>>>...<<<....<<<..............>>>......<
<<<<<<...............<.....<<<...<...<<<<<......>>
>>>(.......<<<......)>>>...>.....>>>......>.......
>>>..>>>>.....<<<<<<<<.........>>>>>>>>......<<<<<
...(((>>>>>..>>>......>>.>>>>>>>.>>...............
<<....>>....>>.........<<<<....>>>>...............
...>>>>>>>>>>>.......<<<<..<<<<......>>>>..>>>>...
<.<........>.>.<<<<<<....<<<<<<<.<<<<<..<<<...<<<.
....>>>...>>>...<<....>>..<<<<.....>>>>.....>>>>>.
>>>>>>>..<<.<...<<<<<<.....<<<<<<<<<..<<<.........
...........>>>...<<<.<<<<<........>>>>>>>>....>>>>
>>>>>...<<<.....>>>......>>>>>>......>.>>..<<<<<<.
...<<<<<....>>>>><<<<<<<<<...<<<<<<<<<.....<<<...<
<<<..<............>..>>>>..>>.>.....>>>>.>>>>>..>>
>>>>>.>>..<<<<<<<<<<......>>>>>>>>>>....<<<......>
>>...<<<<.<<<...<<<(((.....<<<<<<...........<<..<<
<<.<<.....................>>.>>>>.>>...........)))
.....>>>>>>.>>>...>>>>>>><<<<<<....>>>>>>....>>>>>
><.<<<<<<<.<<......<<<<<.<<....>>.>>>>>...>>.>>>>>
>>..>.....>>>>>><......<.....<<<<<<.......>>>>>><<
<<....<<<<<.<<...<<<<<....<<.....>>..>>>>>....((<<
<<<<<.<.<<<...<<<....>>>...>>>..>>>>..<<<<<.......
.>>>>>))<<<<<.........<<<<....<<<<<.......<.......
.................<<....<<.....................>>..
..>>.......................>........>>>>>.........
>>>.>...........>>>>>>>>>..>>.....<<......>>>>>>>.
<<<.......>>>..>>>>..<<<<....<<<<<<<<.<<.........<
.....<<<<<.....<..>......>>>>><<<<<<<..<........>.
.>>>>>>>............<<<<<<<<<..<<<.........>>>..<<
<<<<<.....<<<....>>>.......>>>>>>>..<<<<.<<<..<<<<
<<<..<<<...<<......<<.............>>......>>...>>>
>>>>>..>>>>>.<..........>........<...........<<<<<
.......>>>>>.....>....>>>>...>>.>>>>>>>..>..>>.>>>
>>>>>.>>>>.>.....>.....<<<<<........>>>>>..<<<<<<<
<.<<<.<<......<<<<.<<<<<<..<<<<<.<<.<<<<<<.<<<<.<<
<<<<<<<<..>>>>>>>>>>.>>>>....<<.<<<.<......>.>>>>>
.....>>>>>>.>>..>>>>>..<<<<.....>>>><<<<<<........
...>>>>>>..<<...<<<<<<<...<<<<...........>>>>.....
<<.[.(((>>....>>>>>>>...<<<<..<<<......>>>..>>>>.<
<<....>>>.>>)))]......<<<<<...<<..)))...>>..>>>>>.
............>>>>..>>>>>>.......<<<<.<.<<<<<<...<..
.......>...>>>>>>...>>>>.>.......<.<<<.<<<<<<..<<<
<<<<<<......>>>>>>..>>>.<<<<<.....>>>>>.....>>>>>.
.>...>>>..>....<<<<<<<....>>>.>>>>....>>..>>>>>>>>
>>>....<<<<<<<...<<<<..<<<<<<<...............>>>>>
>>.<<<<<...<<<<...<<<<<<<<<<<....>>>>>>..>>>>>...>
>>>.>>>>>...<<<.<..<<<<<...........>>>>>...>>>>.>>
>>.......>>>>>>>.<<.....>>....<<<<<<<<.........>>>
>....<<<<<<<<.<<<....<<<<<....>>>>>...>>>..>>>>>.>
>>...>>>>....>>>>>>.

Receptor-Ligand Complex Structure

Structure summary

• PDB: 7aso Staphylococcus aureus 70S after 30 minutes incubation a 37C
• Resolution: 3.11 Å
• Binding residue (original residue number in PDB): P2 K3 M4 K5 R8 S25 R26 F28 N35 K36 M55 V58 K59
• Binding residue (residue number reindexed from 1): P1 K2 M3 K4 R7 S24 R25 F27 N34 K35 M54 V57 K58

Gene Ontology

--> -->

UnboundLocalError

Python 3.6.8: /usr/bin/python3 Fri Nov 15 22:33:59 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1435     title=pdb2title(pdbid)

   1436     if bs.startswith("BS"):

=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

   1438     else:

   1439         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '7aso', asym_id = 'j', bs = 'BS01', title = 'Staphylococcus aureus 70S after 30 minutes incubation a 37C'

 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='7aso', asym_id='j', bs='BS01', title='Staphylococcus aureus 70S after 30 minutes incubation a 37C')

   1295         display_ec(ec,csaOrig,csaRenu)

   1296     if go:

=> 1297         display_go(go,uniprot,pdbid,asym_id)

   1298     return pubmed,uniprot

   1299 

global display_go = <function display_go>, go = '0003735,0005840,0006412', uniprot = '', pdbid = '7aso', asym_id = 'j'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412', uniprot='', pdbid='7aso', asym_id='j')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>