Structure of PDB 6o90 Chain j Binding Site BS01

Receptor Information
>6o90 Chain j (length=99) Species: 1351 (Enterococcus faecalis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
QKIRIRLKAYEHRILDQSADKIVETAKRTGADVSGPIPLPTERSLYTVIR
ATHKYKDSREQFEMRTHKRLIDIVNPTPKTVDALMKLDLPSGVNIEIKL
Ligand information
>6o90 Chain a (length=1528) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ugagaguuugauccuggcucaggacgaacgcuggcggcgugccuaauaca
ugcaagucgaacgcuucuuuccuuggaaagaggaguggcggacgggugag
uaacacguggguaaccuacccaucagagggggauaacacuuggaaacagg
ugcuaauaccgcauaacaguuuaugccgcauggcauaagagugaaaggcg
cuuucgggugucgcugauggauggacccgcggugcauuagcuaguuggug
agguaacggcucaccaaggccacgaugcauagccgaccugagagggugau
cggccacacugggacugagacacggcccagacuccuacgggaggcagcag
uagggaaucuucggcaauggacgaaagucugaccgagcaacgccgcguga
gugaagaagguuuucggaucguaaaacucuguuguuagagaagaacaagg
acguuaguaacugaacguccccugacgguaucuaaccagaaagccacggc
uaacuacgugccagcagccgcgguaauacguagguggcaagcguuguccg
gauuuauugggcguaaagcgagcgcaggcgguuucuuaagucugauguga
aagcccccggcucaaccggggagggucauuggaaacugggagacuugagu
gcagaagaggagaguggaauuccauguguagcggugaaaugcguagauau
auggaggaacaccaguggcgaaggcggcucucuggucuguaacugacgcu
gaggcucgaaagcguggggagcaaacaggauuagauacccugguagucca
cgccguaaacgaugagugcuaaguguuggaggguuuccgcccuucagugc
ugcagcaaacgcauuaagcacuccgccuggggaguacgaccgcaagguug
aaacucaaaggaauugacgggggcccgcacaagcgguggagcaugugguu
uaauucgaagcaacgcgaagaaccuuaccaggucuugacauccuuugacc
acucuagagauagagcuuucccuucggggacaaagugacagguggugcau
gguugucgucagcucgugucgugagauguuggguuaagucccgcaacgag
cgcaacccuuauuguuaguugccaucauuuaguugggcacucuagcgaga
cugccggugacaaaccggaggaagguggggaugacgucaaaucaucaugc
cccuuaugaccugggcuacacacgugcuacaaugggaaguacaacgaguc
gcuagaccgcgaggucaugcaaaucucuuaaagcuucucucaguucggau
ugcaggcugcaacucgccugcaugaagccggaaucgcuaguaaucgcgga
ucagcacgccgcggugaauacguucccgggccuuguacacaccgcccguc
acaccacgagaguuuguaacacccgaagucggugagguaaccuuuuugga
gccagccgccuaaggugggauagaugauuggggugaagucguaacaaggu
agccguaucggaaggugcggcuggauca
...<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<.....<<<.
<<<..<<<...<....<<<........>>>....>.>>>......<<...
.....<<<<<<<..<<...<<<<<<<.<.<<.....<<<<<<....>>>>
>>......>>.>.......<<<<<<<<....>>>>>>>>........<<<
<<....>>>>>..>>>>>>>..>>>>>>>>>.<<<....<<<..<<<<<<
<<.......>>>>>>>>>>>......>>>..<<<<<<<<....>>>>...
>>>>.>>.<<<<<.<.........>>>>>>.<<<<<..>>>>>...>>>>
>>.........<<<....<<<<....>>>>..>>>..>>.>>>>>>..<<
<<......<<<<....>>>>.....>>>>....<<<<<<..........<
<<..............>>.>..........>>>>>>......<<<<<(((
...<<<<<.....<<.)))>>.......>>>>>>>>>>..>>>>>>>>>.
.........<<<((.....<<<<...<<<.<<<<<<<.<<<<<<<<<...
....<<<<<<.....>>>>>>.....>>>>>>>..>>>>>>>>>...<<.
<<<<<...<<<<<<<....<<<<<<<<<..<<<......>>>.....>>>
>>>>>>...........<<....>>.>>>>>>>..>>>>>..>>...>>>
...>>>>....<<<<<<...<<...<<<<.........>>>>...>>>>>
>>>..........<<<<<<..<<<<<<<<<<<<<....>>>>>>>>>>>>
>...<<..))>>.....>>>>>>.>>>.<<<......<<<<....>>>>.
...>>>..)))).]<<<<<.<<<<<<<.<<.<<<<<<..<<<<<<<<<<.
.....<<........>>..........<<<<<<<.......<<<<<....
.<<<<<....>>>>>................>>>>.>..<<<.<<<..<<
<<<<.......<<<<<<<<<....>>>..<<<<......>>>>..>>>>>
>.....<<<<.<<<<<<<..<<<..<<......>>>>>...>>>>>>>..
...<<<<<.....>>>>>........>>>>.........>>>...>>>>>
>>>>...>>>>>>>...>>.>>>>>>>>.....<<<<<<<.....<<<..
<<..<<<<....>>>>..>>....>>>.....>>>>>>>......<....
<<<<<<<........>>>>>>>....>.....>>>>>>....<<<<<<<.
........>>>>>>>......>>...>>>>>>>>>>.>>....<..<<.<
.<<<<.<<<..<<<<<<..<<<<...<<.<<<<..<<<..<<.....>>.
>>>.>>>>.>>..>>>>..>>>>>>..>>>.>>>>..>.>>...>.....
<<<<<<<<<....>>>>>>>>>......
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6o90 Cryo-electron microscopy structure of the 70S ribosome from Enterococcus faecalis.
Resolution3.49 Å
Binding residue
(original residue number in PDB)		R7 R9 K11 H15 G38 I40 P41 L42 P43 R46 T50 R53 H56 K57 Y58 K59 R62 H70 R72 D75
Binding residue
(residue number reindexed from 1)		R4 R6 K8 H12 G35 I37 P38 L39 P40 R43 T47 R50 H53 K54 Y55 K56 R59 H67 R69 D72
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0000049 tRNA binding
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
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Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6o90, PDBe:6o90, PDBj:6o90
PDBsum6o90
PubMed33004869
UniProtA0A1B4XKR5

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