Structure of PDB 8p16 Chain i Binding Site BS01 |
|
>8p16 Chain 2 (length=1536)
[Search RNA sequence]
[Download ligand structure]
[Download structure with residue number starting from 1]
[View ligand structure]
|
aaauugaagaguuugaucauggcucagauugaacgcuggcggcaggccua acacaugcaagucgaacgguaacaggaagaauucuuugcugacgaguggc ggacgggugaguaaugucugggaaacugccugauggagggggauaacuac uggaaacgguagcuaauaccgcauaacgucgcaagaccaaagagggggac cuucgggccucuugccaucggaugugcccagaugggauuagcuaguaggu gggguaacggcucaccuaggcgacgaucccuagcuggucugagaggauga ccagccacacuggaacugagacacgguccagacuccuacgggaggcagca guggggaauauugcacaaugggcgcaagccugaugcagccaugccgcgug uaugaagaaggccuucggguuguaaaguacuuucagcggggaggaaggga guaaaguuaauaccuuugcucauugacguuacccgcagaagaagcaccgg cuaacuccgugccagcagccgcgguaauacggagggugcaagcguuaauc ggaauuacugggcguaaagcgcacgcaggcgguuuguuaagucagaugug aaauccccgggcucaaccugggaacugcaucugauacuggcaagcuugag ucucguagagggggguagaauuccagguguagcggugaaaugcguagaga ucuggaggaauaccgguggcgaaggcggcccccuggacgaagacugacgc ucaggugcgaaagcguggggagcaaacaggauuagauacccugguagucc acgccguaaacgaugucgacuuggagguugugcccuugaggcguggcuuc cggagcuaacgcguuaagucgaccgccuggggaguacggccgcaagguua aaacucaaaugaauugacgggggcccgcacaagcgguggagcaugugguu uaauucgaugcaacgcgaagaaccuuaccuggucuugacauccacggaag uuuucagagaugagaaugugccuucgggaaccgugagacaggugcugcau ggcugucgucagcucguguugugaaauguuggguuaagucccgcaacgag cgcaacccuuauccuuuguugccagcgguccggccgggaacucaaaggag acugccagugauaaacuggaggaagguggggaugacgucaagucaucaug gcccuuacgaccagggcuacacacgugcuacaauggcgcauacaaagaga agcgaccucgcgagagcaagcggaccucauaaagugcgucguaguccgga uuggagucugcaacucgacuccaugaagucggaaucgcuaguaaucgugg aucagaaugccacggugaauacguucccgggccuuguacacaccgcccgu cacaccaugggaguggguugcaaaagaaguagguagcuuaaccuucggga gggcgcuuaccacuuugugauucaugacuggggugaagucguaacaaggu aaccguaggggaaccugcgguuggaucaccuccuua |
........<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<.... .<<<.<<<..<<<..<<.<...<<<<<<<<..>>>>>.>>>.>..>>>>> ......<<.......<<<<<<<..<<...<<<<<<<.<.<<.....<<<< <......>>>>>......>>.>.....<<<....>>>....<<<<<<..< <....>>>>>>>>.>>>>>>>..>>.>>>>>>><<<....<<<..<<<<< <<.........>>>>>>>>>>......>>>..<<<<<<<<....>>>>.. .>>>>.>>.<<<<<.<.........>>>>>>.<<<<....>>>>...>>> >>>.........<<<....<<<<....>>>>..>>>..>>.>>>>>>..< <<<......<<<<....>>>>.....>>>>...<.<<<<<......<.<< <<<<<<.......>>>>>>>>.>........>>>>>....>..<<<<<(( (...<<<<<.....<<.)))>>.......>>>>>>>>>>..>>>>>>>>> ..........<<<((.....<<<<...<<<.<<<<<<<.<<<<<<<<<<. .....<<<<<<.....>>>>>>....>>>>>>>>..>>>>>>>>>...<< <<<<<<...<<<<<<<....<<<<<<<<...<<<......>>>......> >>>>>>>...........<<....>>.>>>>>>>..>>>>.>>>>...>> >...>>>>....<<<<<<...<<...<<<<.<.....>.>>>>...>>>> >>>>..........<<<<<<.<<<<<<<<<<<<<.....>>>>>>>>>>> >>..<<..))>>.....>>>>>>.>>>.<<<......<<<<....>>>>. ...>>>..)))).]<<<<<.<<<<<<<.<<.<<<<<<..<<<<<<<<<<. .....<<........>>..........<<<<<<<......<<<<<<<..< <<<<<<....>>>>>>>...<......>..>>>>>.>>.<<<.<<<..<< <<<<.......<<<<<<<<<....>>>..<<<<......>>>>..>>>>> >.....<<<<.<<<<<<<...<<..<<<.....>>>>>....>>>>>>>. ....<<<<<.....>>>>>........>>>>.........>>>...>>>> >>>>>...>>>>>>>...>>.>>>>>>>>.....<<<<<<<.....<<<. .<<...<<<....>>>...>>....>>>.....>>>>>>>.......... .<<<<<<<........>>>>>>>..........>>>>>>....<<<<<<< .........>>>>>>>......>>...>>>>>>>>>>.>>....<..<<. <.<<<<.<<<..<<<<<<<<<<<<....<<<<<<.<<<<..<<....>>. >>>>>>>>>>...>>>>>>>>>>>>..>>>.>>>>..>.>>...>..... <<<<<<<<<....>>>>>>>>>.............. |
|
Global view | Local view | Structure summary |
[Spin on]
[Spin off]
[Reset]
[High quality]
[Low quality]
[White background]
[Black background]
|
[Spin on]
[Spin off]
[Reset]
[High quality]
[Low quality]
[White background]
[Black background]
|
PDB | 8p16 The compensatory mechanism of a naturally evolved E167K RF2 counteracting the loss of RF1 in bacteria |
Resolution | 2.77 Å |
Binding residue (original residue number in PDB) | A2 R3 L5 P7 K8 L9 K10 R13 R14 K22 S23 R26 K31 C32 K33 G39 Q40 H41 Y51 L55 R56 Q59 R62 R63 L68 E69 R70 N74 R81 K83 G84 T110 E113 R115 Q116 S119 H120 K121 V130 N131 I132 S134 Y135 R146 E202 K206 |
Binding residue (residue number reindexed from 1) | A1 R2 L4 P6 K7 L8 K9 R12 R13 K21 S22 R25 K30 C31 K32 G38 Q39 H40 Y50 L54 R55 Q58 R61 R62 L67 E68 R69 N73 R80 K82 G83 T109 E112 R114 Q115 S118 H119 K120 V129 N130 I131 S133 Y134 R145 E201 K205 |
|
|
Enzyme Commision number |
? |
|
|
|