Structure of PDB 7jil Chain i Binding Site BS01 |
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| >7jil Chain 2 (length=1475)
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uacgaugaagaguuugauccuggcucaggaugaacgcuagcggcaggcuu
aacacaugcaagucgagggguagagaccggcgcacgggugcguaacgcgu
augcaaucugccuuucacagagggauagcccagagaaauuuggauuaaua
ccucauaguauuauagagcggcaucacuuuauaauuaaagucacaacggu
gaaagaugagcaugcgucccauuagcuaguugguaagguaacggcuuacc
aaggccacgauggguagggguccugagagggagaucccccacacugguac
ugagacacggaccagacuccuacgggaggcagcagugaggaauauugguc
aauggacgcaagucugaaccagccaugccgcgugcaggaugacgguccgg
auuguaaacugcuuuuguacgagaagaaacacuccuauauauaggagcuu
gacgguaucguaagaauaaggaucggcuaacuccgugccagcagccgcgg
uaauacggaggauccaagcguuauccggaaucacuggguuuaaagggucc
guaggcgguuuaguaagucaguggugaaagcccaucgcucaacgguggaa
cggccauugauacugcugaacuugaauuacugggaaguaacuagaauaug
uaguguagcggugaaaugcuuagauauuacauggaauaccaauugcgaag
gcagguuacuaccaguuuauugacgcugauggacgaaagcguggggagcg
aacaggauuagauacccugguaguccacgccguaaacgauggauacuagc
uguugggcgcaaguucaguggcuaagcgaaagugauaaguaucccaccug
gggaguacgaacgcaaguuugaaacucaaaggaauugacgggggcccgca
caagcgguggaacaugugguuuaauucgaugauacgcgaggaaccuuacc
aaggcuuaaaugcagacugcgauuuggaaacagaucucaguuuacaaggu
gcugcaugguugucgucagcucgugccgugaggugucagguuaaguccua
uaacgagcgcaaccccuguuguuaguugccagcgaggaacucuaacaaga
cugccagugcaaacugugaggaagguggggaugucaaaucaucacggccc
uuacgccuugggcuacacacgugcuacaauggccgguacagagagcagcc
acugggugaccaggagcgaaucuauaaagccggucacaguucggaucgga
gucugcaacucgacuccgugaagcuggaaucgcuaguaaucggauaucag
ccaugauccggugaauacguucccgggccuuguacacaccgcccgucaag
ccauggaagcugggggugccugaagucggugaccgcaaggagcugccuag
gguaaaacugguaacuagggcuaagucguaacaagguagccguaccggaa
ggugcggcuggaacaccuccuuucu |
.........<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<...
..<<<.<<<..<<<..<<........>>>>>......<<.......<<<<
<<<<..<<...<<<<<<<.<<<<....<.<<<<......>>>>.>.....
>>>>.....<<<<<<<<<........>>>>>>>>>....<<....>>.>>
>>>>>..>>>>>>>>>><<<....<<<..<<<<<<<<.......>>>>>>
>>>>>......>>>..<<<<<<<<....>>>>...>>>>.>>.<<<<<.<
.........>>>>>>.<<<<....>>>>...>>>>>>.........<<<.
...<<<<....>>>>..>>>..>>.>>>>>>..<<<<......<.<<.>>
.>......>>>>.....<<<<<..........<<<<<....>>>>>....
.......>>>>>.......<<<<<(((...<<<<<.....<<.)))>>..
.....>>>>>>>>>>..>>>>>>>>>..........<<<((.....<<<<
<..<<<.<<<<<<<.<<<<<<<<<<......<<<<<<.....>>>>>>..
..>>>>>>>>..>>>>>>>>>...<<<.<<<<<..<<<<<<<....<<<<
<<<<<..<<<......>>>.....>>>>>>>>>..........<<<....
>>>>>>>>>>.>>>>>..>>>...>>>..>>>>>....<<<<<<...<<.
..<<<<.<.....>.>>>>...>>>>>>>>..........<<<<<<<<<<
<<<<<<<<....>>>>>>>>>>>>.<<..))>>.....>>>>>>.>>>.<
<<......<<<<....>>>>....>>>..)))).]<<<<<.<<<<<<<.<
<.<<<<<<..<.<<<<<<<<......<<........>>..........<<
<<<<<.....<<.<<<<<<.<<<<<<....>>>>>>.>>>>>>.>><<<.
<<<...<<<<<.......<<<<<<<<<....>>>...<<<......>>>.
..>>>>>>.....<<<..<<<<<<<...<<.....>>....>>>>>>>..
....<<<......>>>..........>>>.......>>>...>>.>>>>>
>...>>>>>>>...>>.>>>>>>.>.....<<<<<<<......<<..<<.
.<<<<....>>>>..>>....>>.....>>>>>>>......<....<<<<
<<<........>>>>>>>....>.....>>>>>>....<<<<<<<.....
.....>>>>>>>......>>...>>>>>>>>>>.>>....<..<<.<.<<
<<.<<<..<<<<<...<<<<<..<<.<<<<..<<....>>.>>>>.>>.>
>>>>...>>>>>..>>>.>>>>..>.>>...>.....<<<<<<<<<....
>>>>>>>>>................ |
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| PDB | 7jil Structural basis of sequestration of the anti-Shine-Dalgarno sequence in the Bacteroidetes ribosome. |
| Resolution | 2.8 Å |
Binding residue
(original residue number in PDB) | A2 R3 P7 K8 T9 K10 R13 K14 K24 R29 Q35 H36 R42 A49 Q56 L65 E66 K67 K80 S107 R109 R112 Q113 S116 H117 R118 H119 E125 V127 N128 I129 P130 Y132 E150 E197 N200 K201 |
Binding residue
(residue number reindexed from 1) | A1 R2 P6 K7 T8 K9 R12 K13 K23 R28 Q34 H35 R41 A48 Q55 L64 E65 K66 K79 S106 R108 R111 Q112 S115 H116 R117 H118 E124 V126 N127 I128 P129 Y131 E149 E190 N193 K194 |
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| Enzyme Commision number |
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