Structure of PDB 7asp Chain i Binding Site BS01

Receptor Information
>7asp Chain i (length=56) Species: 1280 (Staphylococcus aureus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GITHIDYKDTELLKRFISERGKILPRRVTGTSAKYQRMLTTAIKRSRHMA
LLPYVK
Ligand information
>7asp Chain X (length=1447) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
auggagaguuugauccuggcucaggaugaacgcuggcggcgugccuaaua
caugcaagucgagcgaacguuagcggcggacgggugaguaacacguggau
aaccuaccuauaagacugggauaacuucgggaaaccguagcuaauaccgg
auaauauagaaagacacuuauagauggauccgcgcugcauuagcuaguug
guaagguaacggcuuaccaaggcaacgaugcauagccgaccugagagggu
gaucggccacacuggaacugagacacgguccagacuccuacgggaggcag
caguagggaaucuuccgcaaugggcgaaagccugacggagcaacgccgcg
ugagugaugaaggucuucggaucguaaaacucuguuauuagggagaacau
augugcacaucuugacguaccuaaucagaaagccacggcuaacuacgugc
cagcagccgcgguaauacguagguggcaagcguuauccggaauuauuggg
cguaaagcgcgcguaggcgguuuuuuaagucugaugugaaagcccacggc
ucaaccguggagggucauuggaaacuggaaaacuugagugcagaagagga
aaguggaauuccauguguagcggugaaaugcgcagagauauggaggaaca
ccaguggcgaaggcgacuuucuggucuguaacugacgcugaugugcgaaa
gcguggggaucaaacaggauuagauacccugguaguccacgccguaaacg
augagugcuaaguguuagggggugccccuuagugcugcagcuaacgcauu
aagcacuccgccuggggaguacgaccgcaagguugaaacucaaaggaauu
gacggggacccgcacaagcgguggagcaugugguuuaauucgaagcaacg
cgaagaaccuuaccaaaucuugacauccuuugacaacucuagagauagag
ccuaaagugacagguggugcaugguugucgucagcucgugucgugagaug
uuggguuaagucccgcaacgagcgcaacccuuaagcuuaguugccaucau
uaaguugggcacucuaaguugacugccggugacaaaccggaggaaggugg
ggaugacgucaaaucaucaugccccuuaugauuugggcuacacacgugcu
acaauggacaauacaaagggcagcgaaaccgcgaggucaagcaaucccau
aaaguuguucucaguucggauuguagucugcaacucgacuacaugaagcu
ggaaucgcuaguaaucguagaucagcaugcuacggugaauacguucccgg
gucuuguacacaccgcccgucacaccacgagaguuuguaacacccgaagc
cgguggaguaaccuuuuaggagcuagccgucgaaggugggacaaaugauu
ggggugaagucguaacaagguagccguaucggaaggugcggcuggau
......<<<....[....>>>..<<...<<<.<...<<..........<<
<.......<................>.......<<........<..<<..
..<<....<<<..................<....>...............
...................>>>...>>.>.>..>..<<....<<......
.....................>>......>>...<<<<.<<<....>>>.
...>>>>.>>.<<<<<.<.........>>>>>>..<<.....>>......
..>>>.........<<<....<<<<....>>>>..>>>........>>..
...<<.......<<......>>......>>....................
...............................<<<<<.((....<<<<...
.....))..........>>>>.>>>>>..>.>>>..>>............
.<<..................<<<......<...................
....................>........>>>..................
...........<<.......<........>..........>>........
..................................................
..............<<<<.........>>>>...................
......((...............................((..>>))...
..))..........<........<<<....>>>......>.....]....
.....<<<.........<<<<<....<<<<<<..................
...............<<<.......<<.<<......<<<<......>>>>
....>>..>>...........<<.<<<........<.<<...........
.................>>>........<<<...................
...........................<<<.....>>>...........>
>>.......>.>>....>>...........>>>.........>>>>>>..
.................<<...........................>>..
.........................<<..........>>...........
...>>>>>..........................................
.>>>............<.......<..<<....<<<<<..<<<<....<.
<<<<<..................>.>>>>.>...>>>>..>>>>>....>
>.>........>...........<<<<..........>>>>......
Receptor-Ligand Complex Structure
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PDB7asp Staphylococcus aureus 50S after 30 minutes incubation a 37C
Resolution2.86 Å
Binding residue
(original residue number in PDB)
I23 H25 Y28 T61 K65 R66 R68 H69 Y75
Binding residue
(residue number reindexed from 1)
I2 H4 Y7 T40 K44 R45 R47 H48 Y54
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:7asp, PDBe:7asp, PDBj:7asp
PDBsum7asp
PubMed
UniProtA0A077UZF4

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