Structure of PDB 8uu9 Chain h Binding Site BS01

Receptor Information
>8uu9 Chain h (length=131) Species: 1642 (Listeria innocua) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VMTDPIADFLTRIRNANMVKHDKLELPASKIKKEIAEILKREGFIRDVEY
IEDDNAGTIRVFLKYGATGERVITGLKRISKPGLRVYAKSTEVPKVLNGL
GIAIVSTSQGVLTDKEARAKQVGGEVLAYVW
Ligand information
>8uu9 Chain a (length=1515) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
aagagaguuugauccuggcucaggacgaacgcuggcggcgugccuaauac
augcaagucgaacgaacggaaguuaguggcggacgggugaguaacacgug
ggcaaccugccuguaaguuggggauaacuccgggaaaccggggcuaauac
cgaaugauagaguguggcgcaugccacgcucuugaaagaugguuucggcu
aucgcuuacagaugggcccgcggugcauuagcuaguugguaggguaaugg
ccuaccaaggcaacgaugcauagccgaccugagagggugaucggccacac
ugggacugagacacggcccagacuccuacgggaggcagcaguagggaauc
uuccgcaauggacgaaagucugacggagcaacgccgcguguaugaagaag
guuuucggaucguaaaguacuguuguuagagaagaacaaggauaagagua
acugcuugucccuugacgguaucuaaccagaaagccacggcuaacuacgu
gccagcagccgcgguaauacguagguggcaagcguuguccggauuuauug
ggcguaaagcgcgcgcaggcggucuuuuaagucugaugugaaagcccccg
gcuuaaccggggagggucauuggaaacuggaagacuggagugcagaagag
gagaguggaauuccacguguagcggugaaaugcguagauauguggaggaa
caccaguggcgaaggcgacucucuggucuguaacugacgcugaggcgcga
aagcguggggagcaaacaggauuagauacccugguaguccacgccguaaa
cgaugagugcuaaguguuaggggguuuccgccccuuagugcugcagcuaa
cgcauuaagcacuccgccuggggaguacgaccgcaagguugaaacucaaa
ggaauugacgggggcccgcacaagcgguggagcaugugguuuaauucgaa
gcaacgcgaagaaccuuaccaggucuugacauccuuugaccacucuggag
acagagcuuucccgggacaaagugacagguggugcaugguugucgucagc
ucgugucgugagauguuggguuaagucccgcaacgagcgcaacccuugau
uuuaguugccagcauuuaguugggcacucuaaagugacugccggugcaag
ccggaggaagguggggaugacgucaaaucaucaugccccuuaugaccugg
gcuacacacgugcuacaauggaugguacaaagggucgcgaagccgcgagg
uggagccaaucccauaaaaccauucucaguucggauuguaggcugcaacu
cgccuacaugaagccggaaucgcuaguaaucguggaucagcaugccacgg
ugaauacguucccgggccuuguacacaccgcccgucacaccacgagaguu
uguaacacccgaagucgguaggguaaccggagccagccgccgaagguggg
acagauaauuggggugaagucguaacaagguagccguaucggaaggugcg
gcuggaucaccuccu
....<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<.....<<<
.<<<..<<<..<<.<<......>>.>>>>>......<<........<<<<
<<<..<<...<<<<<<<<<.<<.....<<<<<<....>>>>>>......>
>.>.....<<<<<<<<<<....>>>>>>>>>>.....<<<<<<....>>>
>>>>>>>>>>>..>>>>>>>>>.<<<....<<<..<<<<<<<<.......
>>>>>>>>>>>......>>>..<<<<<<<<....>>>>...>>>>.>>.<
<<<<.<.........>>>>>>.<<<<<..>>>>>...>>>>>>.......
..<<<....<<<<....>>>>..>>>..>>.>>>>>>..<<<<......<
<<<....>>>>.....>>>>...<<<<<<<.......<.<<<<<<<....
....>>>>>>>.>........>>>>>>...>..<<<<<(((...<<<<<.
....<<.)))>>.......>>>>>>>>>>..>>>>>>>>>..........
<<<((.....<<<<...<<<.<<<<<<<.<<<<<<<<<.......<<<<<
<.....>>>>>>.....>>>>>>>..>>>>>>>>>...<<<<<<<<...<
<<<<<<....<<<<<<<<<..<<<......>>>.....>>>>>>>>>...
........<<....>>.>>>>>>>..>>>>>.>>>...>>>...>>>>..
..<<<<<<...<<...<<<<.<.....>.>>>>...>>>>>>>>......
....<<<<<<..<<<<<<<<<<<<<....>>>>>>>>>>>>>...<<..)
)>>.....>>>>>>.>>>.<<<......<<<<....>>>>....>>>..)
))).]<<<<<.<<<<<<<.<<.<<<<<<..<<<<<<<<<<......<<..
......>>..........<<<<<<<......<<<<<<<....<<<<<...
.>>>>>....<<<>>>.>>>>>.>>.<<<.<<<..<<<<<<<......<<
<<<<<<<....>>>..<<<<......>>>>..>>>>>>.....<<<<.<<
<<<<<..<<<..<<......>>>>>...>>>>>>>.....<<<<<....>
>>>>........>>>>.......>.>>>...>>>>>>>>>...>>>>>>>
...>>.>>>>>>>>.....<<<<<<<.....<<<..<<...<<<....>>
>...>>....>>>.....>>>>>>>......<....<<<<<<<.......
.>>>>>>>....>.....>>>>>>....<<<<<<<.........>>>>>>
>......>>...>>>>>>>>>>.>>....<..<<.<.<<<<.<<<..<<<
<<<..<<<<....<.<<<<..<<<..<<>>.>>>.>>>>.>...>>>>..
>>>>>>..>>>.>>>>..>.>>...>.....<<<<<<<<<....>>>>>>
>>>............
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8uu9 Mechanistic insights into the alternative ribosome recycling by HflXr.
Resolution3.1 Å
Binding residue
(original residue number in PDB)		V2 M3 T4 D5 D9 T12 R13 N16 H22 S30 K31 N56 K82 P83 G84 Y88 K90 S91 S107 T108 S109 Q122 G124 E126
Binding residue
(residue number reindexed from 1)		V1 M2 T3 D4 D8 T11 R12 N15 H21 S29 K30 N55 K81 P82 G83 Y87 K89 S90 S106 T107 S108 Q121 G123 E125
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
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Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8uu9, PDBe:8uu9, PDBj:8uu9
PDBsum8uu9
PubMed38407413
UniProtA0A0U5A6U3

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