Structure of PDB 8uu7 Chain h Binding Site BS01

Receptor Information
>8uu7 Chain h (length=131) Species: 1642 (Listeria innocua) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VMTDPIADFLTRIRNANMVKHDKLELPASKIKKEIAEILKREGFIRDVEY
IEDDNAGTIRVFLKYGATGERVITGLKRISKPGLRVYAKSTEVPKVLNGL
GIAIVSTSQGVLTDKEARAKQVGGEVLAYVW
Ligand information
>8uu7 Chain a (length=1516) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
aaagagaguuugauccuggcucaggacgaacgcuggcggcgugccuaaua
caugcaagucgaacgaacggaaguuaguggcggacgggugaguaacacgu
gggcaaccugccuguaaguuggggauaacuccgggaaaccggggcuaaua
ccgaaugauagaguguggcgcaugccacgcucuugaaagaugguuucggc
uaucgcuuacagaugggcccgcggugcauuagcuaguugguaggguaaug
gccuaccaaggcaacgaugcauagccgaccugagagggugaucggccaca
cugggacugagacacggcccagacuccuacgggaggcagcaguagggaau
cuuccgcaauggacgaaagucugacggagcaacgccgcguguaugaagaa
gguuuucggaucguaaaguacuguuguuagagaagaacaaggauaagagu
aacugcuugucccuugacgguaucuaaccagaaagccacggcuaacuacg
ugccagcagccgcgguaauacguagguggcaagcguuguccggauuuauu
gggcguaaagcgcgcgcaggcggucuuuuaagucugaugugaaagccccc
ggcuuaaccggggagggucauuggaaacuggaagacuggagugcagaaga
ggagaguggaauuccacguguagcggugaaaugcguagauauguggagga
acaccaguggcgaaggcgacucucuggucuguaacugacgcugaggcgcg
aaagcguggggagcaaacaggauuagauacccugguaguccacgccguaa
acgaugagugcuaaguguuaggggguuuccgccccuuagugcugcagcua
acgcauuaagcacuccgccuggggaguacgaccgcaagguugaaacucaa
aggaauugacgggggcccgcacaagcgguggagcaugugguuuaauucga
agcaacgcgaagaaccuuaccaggucuugacauccuuugaccacucugga
gacagagcuuucccgggacaaagugacagguggugcaugguugucgucag
cucgugucgugagauguuggguuaagucccgcaacgagcgcaacccuuga
uuuuaguugccagcauuuaguugggcacucuaaagugacugccggugcaa
gccggaggaagguggggaugacgucaaaucaucaugccccuuaugaccug
ggcuacacacgugcuacaauggaugguacaaagggucgcgaagccgcgag
guggagccaaucccauaaaaccauucucaguucggauuguaggcugcaac
ucgccuacaugaagccggaaucgcuaguaaucguggaucagcaugccacg
gugaauacguucccgggccuuguacacaccgcccgucacaccacgagagu
uuguaacacccgaagucgguaggguaaccggagccagccgccgaaggugg
gacagauaauuggggugaagucguaacaagguagccguaucggaaggugc
ggcuggaucaccuccu
.....<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<.....<<
<.<<<..<<<..<<.<<<....>>>.>>>>>......<<........<<<
<<<<..<<...<<<<<<<<<.<<.....<<<<<<....>>>>>>......
>>.>.....<<<<<<<<<<....>>>>>>>>>>.....<<<<<<....>>
>>>>>>>>>>>>..>>>>>>>>>.<<<....<<<..<<<<<<<<......
.>>>>>>>>>>>......>>>..<<<<<<<<....>>>>...>>>>.>>.
<<<<<.<.........>>>>>>.<<<<....>>>>...>>>>>>......
...<<<....<<<<....>>>>..>>>..>>.>>>>>>..<<<<......
<<<<....>>>>.....>>>>...<<<<<<<.......<.<<<<<<<...
.....>>>>>>>.>........>>>>>>...>..<<<<<(((...<<<<<
.....<<.)))>>.......>>>>>>>>>>..>>>>>>>>>.........
.<<<((.....<<<<...<<<.<<<<<<<.<<<<<<<<<.......<<<<
<<.....>>>>>>.....>>>>>>>..>>>>>>>>>...<<<<<<<<...
<<<<<<<....<<<<<<<<<..<<<......>>>.....>>>>>>>>>..
.........<<....>>.>>>>>>>..>>>>>.>>>...>>>...>>>>.
...<<<<<<...<<...<<<<.<.....>.>>>>...>>>>>>>>.....
.....<<<<<<..<<<<<<<<<<<<<....>>>>>>>>>>>>>...<<..
))>>.....>>>>>>.>>>.<<<......<<<<....>>>>....>>>..
)))).]<<<<<.<<<<<<<.<<.<<<<<<..<<<<<<<<<<......<<.
.......>>..........<<<<<<<......<<<<<<<....<<<<<..
..>>>>>....<<<>>>.>>>>>.>>.<<<.<<<..<<<<<<.......<
<<<<<<<<....>>>..<<<<......>>>>..>>>>>>.....<<<<.<
<<<<<<..<<<..<<......>>>>>...>>>>>>>.....<<<<<....
>>>>>........>>>>.........>>>...>>>>>>>>>...>>>>>>
>...>>.>>>>>>>>.....<<<<<<<.....<<<..<<...<<<....>
>>...>>....>>>.....>>>>>>>......<....<<<<<<<......
..>>>>>>>....>.....>>>>>>....<<<<<<<.........>>>>>
>>......>>...>>>>>>>>>>.>>....<..<<.<.<<<<.<<<..<<
<<<<..<<<<....<.<<<<..<<<..<<>>.>>>.>>>>.>...>>>>.
.>>>>>>..>>>.>>>>..>.>>...>.....<<<<<<<<<....>>>>>
>>>>............
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8uu7 Mechanistic insights into the alternative ribosome recycling by HflXr.
Resolution3.2 Å
Binding residue
(original residue number in PDB)		V2 M3 T4 T12 R13 R15 N16 H22 S30 K31 N56 A57 K82 G84 Y88 K90 S91 S107 T108 S109
Binding residue
(residue number reindexed from 1)		V1 M2 T3 T11 R12 R14 N15 H21 S29 K30 N55 A56 K81 G83 Y87 K89 S90 S106 T107 S108
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
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Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8uu7, PDBe:8uu7, PDBj:8uu7
PDBsum8uu7
PubMed38407413
UniProtA0A0U5A6U3

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