Structure of PDB 6o8x Chain h Binding Site BS01

Receptor Information
>6o8x Chain h (length=131) Species: 1351 (Enterococcus faecalis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VMTDPIADFLTRIRNANMVKHETLEVPASKIKRDIAEILKREGFIRDVEY
IEDDKQGVIRVFLKYGKNEERVITNLKRISKPGLRAYVKADEVPKVLNGL
GIAIISTSEGVITDKEARAKNIGGEVIAYVW
Ligand information
>6o8x Chain a (length=1528) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ugagaguuugauccuggcucaggacgaacgcuggcggcgugccuaauaca
ugcaagucgaacgcuucuuuccuuggaaagaggaguggcggacgggugag
uaacacguggguaaccuacccaucagagggggauaacacuuggaaacagg
ugcuaauaccgcauaacaguuuaugccgcauggcauaagagugaaaggcg
cuuucgggugucgcugauggauggacccgcggugcauuagcuaguuggug
agguaacggcucaccaaggccacgaugcauagccgaccugagagggugau
cggccacacugggacugagacacggcccagacuccuacgggaggcagcag
uagggaaucuucggcaauggacgaaagucugaccgagcaacgccgcguga
gugaagaagguuuucggaucguaaaacucuguuguuagagaagaacaagg
acguuaguaacugaacguccccugacgguaucuaaccagaaagccacggc
uaacuacgugccagcagccgcgguaauacguagguggcaagcguuguccg
gauuuauugggcguaaagcgagcgcaggcgguuucuuaagucugauguga
aagcccccggcucaaccggggagggucauuggaaacugggagacuugagu
gcagaagaggagaguggaauuccauguguagcggugaaaugcguagauau
auggaggaacaccaguggcgaaggcggcucucuggucuguaacugacgcu
gaggcucgaaagcguggggagcaaacaggauuagauacccugguagucca
cgccguaaacgaugagugcuaaguguuggaggguuuccgcccuucagugc
ugcagcaaacgcauuaagcacuccgccuggggaguacgaccgcaagguug
aaacucaaaggaauugacgggggcccgcacaagcgguggagcaugugguu
uaauucgaagcaacgcgaagaaccuuaccaggucuugacauccuuugacc
acucuagagauagagcuuucccuucggggacaaagugacagguggugcau
gguugucgucagcucgugucgugagauguuggguuaagucccgcaacgag
cgcaacccuuauuguuaguugccaucauuuaguugggcacucuagcgaga
cugccggugacaaaccggaggaagguggggaugacgucaaaucaucaugc
cccuuaugaccugggcuacacacgugcuacaaugggaaguacaacgaguc
gcuagaccgcgaggucaugcaaaucucuuaaagcuucucucaguucggau
ugcaggcugcaacucgccugcaugaagccggaaucgcuaguaaucgcgga
ucagcacgccgcggugaauacguucccgggccuuguacacaccgcccguc
acaccacgagaguuuguaacacccgaagucggugagguaaccuuuuugga
gccagccgccuaaggugggauagaugauuggggugaagucguaacaaggu
agccguaucggaaggugcggcuggauca
...<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<.....<<<.
<<<..<<<..<<.<<<<<<<......>>>>>>>.>>>>>......<<...
.....<<<<<<<..<<...<<<<<<<.<.<<.....<<<<<<....>>>>
>>......>>.>.......<<<<<<<<<..>>>>>>>>>.......<<<<
........>>>>.>>>>>>>..>>>>>>>>>.<<<....<<<..<<<<<<
<<.......>>>>>>>>>>>......>>>..<<<<<<<<....>>>>...
>>>>.>>.<<<<<.<.........>>>>>>.<<<<<..>>>>>...>>>>
>>......<..<<<....<<<<....>>>>..>>>.>>>.>>>>>>..<<
<<......<<<<....>>>>.....>>>>...<<<<<<<.........<<
.<<<..........>>>..>>.........>>>>>>...>..<<<<<(((
...<<<<<.....<<.)))>>.......>>>>>>>>>>..>>>>>>>>>.
.........<<<((.....<<<<...<<<.<<<<<<<.<<<<<<<<<...
....<<<<<<.....>>>>>>.....>>>>>>>..>>>>>>>>>...<<<
<<<<<...<<<<<<<....<<<<<<<<<..<<<......>>>.....>>>
>>>>>>...........<<....>>.>>>>>>>..>>>>>.>>>...>>>
...>>>>....<<<<<<...<<...<<<<.........>>>>...>>>>>
>>>..........<<<<<<..<<<<<<<<<<<<......>>>>>>>>>>>
>...<<..))>>.....>>>>>>.>>>.<<<......<<<<....>>>>.
...>>>..)))).]<<....<<<<<<<.<<.<<<<<<..<<<<<<<<<<.
.....<<........>>..........<<<<<<<.......<<<......
.<<<<<....>>>>>.......<...>.....>.>.>...<<.<<<..<<
<<<<.......<<<<<<<<<....>>>..<<<<......>>>>..>>>>>
>.....<<<<.<<<<<<<..<<<...<......>.>>>...>>>>>>>..
...<<<<<.....>>>>>........>>>>.........>>>...>>>>>
>>>....>>>>>>>...>>.>>>>>>>>......<<<<<<.....<<<..
<<..<<<<....>>>>..>>....>>>.....>>>>>>.......<....
<<<<<<<........>>>>>>>....>.....>>>>>>....<<<<<<<.
........>>>>>>>......>>...>>>>>>>....>>.......<<.<
.<<<<.<<<..<<<<<<..<<<<...<<.<<<<..<<<..<<.....>>.
>>>.>>>>.>>..>>>>..>>>>>>..>>>.>>>>..>.>>.........
<<<<<<<<<....>>>>>>>>>......
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6o8x Cryo-electron microscopy structure of the 70S ribosome from Enterococcus faecalis.
Resolution3.68 Å
Binding residue
(original residue number in PDB)		V2 T4 T12 R13 R15 N16 K31 K56 Q57 P83 Y88 K90 A91 T108 S109 G124
Binding residue
(residue number reindexed from 1)		V1 T3 T11 R12 R14 N15 K30 K55 Q56 P82 Y87 K89 A90 T107 S108 G123
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6o8x, PDBe:6o8x, PDBj:6o8x
PDBsum6o8x
PubMed33004869
UniProtA0A1B4XKS6

[Back to BioLiP]