Structure of PDB 6az3 Chain h Binding Site BS01

Receptor Information
>6az3 Chain h (length=125) Species: 5661 (Leishmania donovani) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
CPRVQYRRRMHYATRGNRMKMVRTPGNKLVMQKRAKRSQGIHTPWVLGHK
RLGGTKALRHIDARLASRHEKSVSRAYGGVLSHDQVRDRVVRAFLVEEQR
IVKQALKEHSKMKLSHKRTANKKKS
Ligand information
>6az3 Chain 1 (length=1620) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
agaccugaguguggcaggacuacccgccgaacuuaagcauauuacucagc
ggaggaaaagaaaacaaccgugauucucucagugagcggcgagcgaagag
ggaacgaacucguugccgaaucgggucuuacaaggccuugaguuguggca
caaauaucauuucgugguuggugcaggaguggcgaaauucaagcgcaaag
caaacccguugcugaauacaacccuucaugugaguauugagccaaagaag
guguuagcccauugagccauaaaccugagcgccucaugaacaagcgagua
gcacuguuugggaaugcagugucaaguggcagguauuugucugccaaagu
uaaauacagaguaggaagaccgauagcgaacaaguagcgugagcgaaagu
uugaaaagcacuuuggaaagagagugaaauagaaccugaagucgugacaa
agacaauggaaguaccuccauuucaacggccagaaccagcccuacugcau
uauccugucgggggucaaaauccggcgggcaagaagugcaagaagggucu
uggugaaaugagcggaguauuugagcugugcacggcgcgcacgcacucuu
cuccgugaugcuccauguuggcgaugaaauggggugcccccacccgucuu
gaaacacggaccaaggagucaaacagacgcgcaagggaggagauaugguu
gccaguacuuucucguacugaaagggagaugcaaaaugcaucuguggugu
gcacacgucauuugcccaacaccgaccggcccuccguggguugcguugga
gugugccuguuuggacccgaaagguggugaacuaugccugaacaagguga
agcccggggaaacccagguggaggccuguagcgaugcugacgugcaaauc
gcucguaugauuuggguaucggagcgaaagacucaucgaaccaccuagua
gcugguucacaucgaaguuucccucaggauagcuggugcuaguagaagua
uugugcgguaaagcaaaugauuagaggcauugggaccuauucucaaacuu
uaaaugugcaaacaaaccggccuuagccaacugcaaggccggaaagaaaa
gaauuagaggcaccaagugggccuucuucgguaagcggagcaggcgaugc
ggaaugaaccgcuuagggauauguggcgucaaaacuuaugggcucauucu
cgauacguaaaggguguugguggauauccaccggccccgaaaauggauga
cgcuuaagcccaauuagugauugcccauuauuccuuugguaagggcggaa
acaaaggagaaaguguagcccuuccgauguagauguggccuggagguuag
gacgaagcuuauggcgugagccuaagauggaccggccucuagugcagauc
uugguuggcguagcaaagaucuaacggagauauacucaacaugcaacguu
ggauacuggagcggggaaggauuucgugccaacggcacucguacacgagu
uguucggaaacugagcacaacguuauaucguuuuguuaggaaagugaagg
uggucggccauaacugaaaaggggcaacagagaaccugggauuauauucc
aaaaagaaauugcauguggg
......................<<<<<......<<....>>.......>>
>>.>.........<<....>>..<<<<<<......<<.....>>....>>
>>>>...<<<...<<<<<..<<<<<<<......>>>>>.>>....>>>>>
..........<<<<<<...<<<<<<<<.<<<<<......<<<......<<
<<.......>>>>.....<<........>>......>>>.<<.......(
(.....>>)).....>>>>>...>>>..>>>>>.>>>>>>..........
<<<<<<<........>>>>>>>.....<<<<<........>>>>>..>>>
....................................<<....>>......
..........<<<......>>>............................
......(((..<<<<<<.<<<<<<..((.<<<<.<<<<<<<<<...<<<<
...<<<<<<<<<........>>>>>>>>>.....>.>>>....>>>>>..
>>>>........<<<<<.....<<...<<<<.<<...>>...>>>>>>..
>>>>>.....<<<<...>>>>))..>>>>>>>>>>>>..))).<<<<...
.....>>>><<<<<<...<<<<<<<<.<<<<<..<<<.<<<<.<......
......>>>>>>>>...<<....>>..<<<<<.....>>>>>...<<<<<
...<<.<...>.>>....>>>>><<<<<<<<<.....>>>>>>.>>>...
>>>>>.>>>>>>>>.<<.<..<<<<<<<.....<<<<<<<<<..<<<...
.<<<.<<<....>>>.>>>.....>>>...<<<<.<<.<<........>>
>>>>>>....>>>>>>>>>...<<.......>>......>>>>>>...>.
.>.>>...<<<<<....<.<<<....>>>.><<<<<<<<<.....<<...
<<<<<<<...<<<....<<<....<<<...<..>.>>>....>>>..>.>
>...>>>>>>>.....<<<<<<<<.<<.....>>>>>>>>>>........
...>>...>>>>>>>.>>..<<<<.<<<<<.....>>>>>.>>>>...<<
<<......>>>>..<<<<<<<...<<<(((......<..<<<<.......
.<.........<<<.<<<<<<<<<..>>>>>>>>>>>>..........))
).>....>>>>.>.........>>>...>>>>>>>((((.<<<<<.....
.....>>>>.........>>>>>))))....>>>>>....<<<<<<<<..
.......<<<..<<<....>>>.>>>.......>>>>>>>>........>
>>>>>..............<<<<<<<....................>>>>
>>>....................<<<<<....<<.....>>..>>>>>..
..<<..........<<.<<<<<......>>>>............<..<<.
<..........>.>>..>...>.>>..........<<<<.........>>
....>>.>>...........
Receptor-Ligand Complex Structure
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PDB6az3 Atomic resolution snapshot of Leishmania ribosome inhibition by the aminoglycoside paromomycin.
Resolution2.5 Å
Binding residue
(original residue number in PDB)		C3 R5 Q7 R9 R10 R11 M12 H13 Y14 T16 T26 P27 G28 Q34 K38 R61 H62 I63 R66
Binding residue
(residue number reindexed from 1)		C1 R3 Q5 R7 R8 R9 M10 H11 Y12 T14 T24 P25 G26 Q32 K36 R59 H60 I61 R64
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6az3, PDBe:6az3, PDBj:6az3
PDBsum6az3
PubMed29150609
UniProtA0A3Q8IHK2

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