Structure of PDB 7ode Chain g Binding Site BS01

Receptor Information
>7ode Chain g (length=62) Species: 83333 (Escherichia coli K-12) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVA
RVKTLLNEKAGA
Ligand information
>7ode Chain I (length=1990) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
gguuaagcgacuaagcguacacgguggaugcccuggcagucagaggcgau
gaaggacgugcuaaucugcgauaagcgucgguaaggugauaugaaccguu
auaaccggcgauuuccgaauggggaaacccaguguguuucgacacacuau
cauuaacugaauccauagguuaaugaggcgaaccgggggaacugaucuaa
guaccccgaggaaaagaaaucaaccgagauucccccaguagcggagcgaa
cggggagcagcccagagccugaaucaguguguguguuaguggaagcgucu
ggaaaggcgcgcgauacagggugacagccccguacacaaaaaugcacaug
cugugagcucgaugaguagggcgggacauccugucugaauagggggccau
ccuccaaggcuaaauacuccugacugaccgauagugaaccaguaccguga
gggaaaggcgaaaagaaccccggcgaggggagugaaaaagaaccugaaac
cguguacguacaagcagugggagcacgcaggcgugugacugcguaccuuu
uguauaaugggucagcgacuuauauucuguagcaagguuaaccgaauagg
ggagccgaaguugcaggguauagacccgaaacccggugaucuagccaugg
gcagguugaagguuggguaacacuaacuggaggaccgaaccgacuaaugu
ugaaaaauuagcggaugacuuguggcugggggugaaaggccaaucaaacc
gggagauagugguucuccccgaaagcuaguagcgccucgugaauucaucu
ccgcggagaauguuaucacgggagacacacggcgggugcaaguccgucgu
gaagagggaaacaacccagaccgccagcuaaggucccaaagucaugguua
agugggauguaacggggcuaaaccaugcaccgaagcugcggcagcgacgc
gcguuguuggguaggggagcguucuguaagccugcgaaggugugcuguga
ggcaugcuggagguaucagaagugcgaaugcugacauaaguaacgauaaa
gcgggugaaaagcccgcucgccggaagaccaaggguuccuguccaacguu
aaucggggcagggugagucgaccccuaaggcgaggccgaaaggcguaguc
gaugggaaacagguuaauauuccuguacuugguguuacugcgaagggggg
acggagaaggcuauguuggccgggcgacgguugucccgguuuaagcgugu
aggcugguuuuccaggcaaauccggaaaaucaaggcugaggcgugaugac
gaggcacuggugcugaagcaacaaaugcccugcuuccaggaaaagccucu
aagcacagguaacaucaaaucguaccccaaaccgacacagguggucaggu
agagaauaccaaggcgcuugagagaacucgggugaaggaacuaggcaaaa
uggugccguaacuucgggagaaggcacgcugauauguaggugaggucccc
gcggauggagcugaaaucagucgaagauaccagcuggcugcaacuguuua
uuaaaaacacagcacugugcaaacacgaaaguggacguauacggugugac
gccuuggcguaaugauggccaggcugucuccacccgagacucagugaaau
ugaacucgcugugaugcaguguacccgcggcaagaggaguugacccguau
ccggguugcucccuaucugccgugggcgcuggagaacugaggggggcugc
uccuaguacgagaggaccggaguggacgcaucacugguguucggguuguc
augccaauggcacugcccgguagcuaaaugcggaagagauaagugcgcac
gaacuugccccgagaugaguucucccugacccuuuaaggguccugaagga
acguugaagacgacgacguugauaggccggguguguaagcgcagcgaugc
guugagcuaaccgguacuaaugaaccgugaggcuuaaccu
<<<<<<<<......<<<<<<<<<<<.....<<..<<<<<<<<<<<<<...
...<<<<<<....(((.>>>.....<<<<<<<..<<<)))....>>>...
...>>>>>>>...>>>....<<<....>>><<<<<<<....>>>>>>>.<
<<<<<<<<.........>>>>>>>>>.>>...<<<<<<.....<..>...
...>>>>>.>...<.....<<....>>..<<<<<<.....<<...>>...
.>>>>>>..<<<..<<<<......<<<<<<<<<<<<<.<<<...<<<<<.
.....>>>>>((......<<<.....))>>>...>>>...>>>>>>>>>>
>>>...>>>>........<<<<<<<<..>>>>>>>>.....<<<<.....
.>>>>..>>>....>.>>.>>>>>>>.>>...............<<....
>>....>>.........<<<<.....>>>>..................>>
>>>>>>>>>.......<<<<..<<<<<<..>>>>>>..>>>>...<.<<.
.....>>.>.<<<<<<<..<<<<<<<<<<<<<<..<<<...<<.....>>
...>>>...>>>>>>>>>>>>>>.<<.....<<<<<<.....<<<<<<<<
<..<<<....<<<<<<......>>>>>>.....>>>...<<<.<<<<<..
......>>>>>>>>....>>>>>>>>>...<<<.....>>>......>>>
>>>.......>>..<<<<<<....<<<<.>>>>.<<<<<<<<...<<<<<
<<..>>>>.>>>...>>>>>>>.>...<<<<<<<<<......>>>>>>>>
>....<<<......>>>...<<<<.<<<...<<<(((.....<<<<<<..
.............))).....>>>>>>.>>>...>>>>>>><<<<<<<<.
.>>>>>>>>....>>>>>><.<<<<<...<<<......<<<<<<<<....
>>>>>>>>...>>>..>>>>>..>....>>>>>>><......<<.....<
<<<<<.......>>>>>><<<<....<<<<<.<<...<<<<<<...<<..
...>>.>>>>>>....((<<<.<<<...<<<...<<<....>>>...>>>
...>>>..<<<<<........>>>>>))<<<<<<<<<<<<<...<<<<..
..<<<<..<<<..<<<<<<<<<<<....(((...>>>>>><<..<<<<..
.<<<<<<<<<<<<.<<.....>>>>>>>>>>..>>>>...>>>>...>><
..<<<<<..>>>>>...>>>>>>...>>>...>>>>.........>>>>.
..>>...>>>>>>>>>>>.>>>..>>.....<<......>>>>>>>.<<<
<.....>>>>..>>>>..<<<<....<<<<<<<<.<<.............
..<<<<<...............>>>>><<<<<<.....<<<...<<<<..
..>>>>...>>>...>>>>>>............<<<<<<<<<..<<<...
......>>>..<<<<<<<.....<<<....>>>.......>>>>>>>.<<
<<<..>>>>>..>>.>>>>>>>.....>>.>>>>>>>>.>>>>>>.....
>.....<<<<<.....>>>>>..<<<<<<<<.<<<<<..<.<<<<<<...
.>>>>>>>...>>..>>>>>>>>>>>....<<<<<<<...<<<<..<<<<
<<<...............>>>>>>>.<<<<<...<<<<...<<<<<<<<<
<<))).>>>>>>..>>>>>...>>>>.>>>>>...<<<....<<<<>>>>
...>>>.>>>>.......>>>>>>>..<<<<<.....>>>>><....<<.
.<<<<<.......>>>>>....<<<<<<<<..<<....<<<<<....>>>
>>...>>...>>>>>.>>>.....>>..>..>>>>>>>>.
Receptor-Ligand Complex Structure
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PDB7ode Structural Consequences of Deproteinating the 50S Ribosome.
Resolution2.84 Å
Binding residue
(original residue number in PDB)		K4 R7 Q39 S40 H41 K44 R47 R48 A51 R52 K54 T55
Binding residue
(residue number reindexed from 1)		K3 R6 Q38 S39 H40 K43 R46 R47 A50 R51 K53 T54
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0000027 ribosomal large subunit assembly
GO:0002181 cytoplasmic translation
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:7ode, PDBe:7ode, PDBj:7ode
PDBsum7ode
PubMed36358955
UniProtP0A7M6|RL29_ECOLI Large ribosomal subunit protein uL29 (Gene Name=rpmC)

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