Structure of PDB 6spe Chain g Binding Site BS01

Receptor Information
>6spe Chain g (length=154) Species: 287 (Pseudomonas aeruginosa) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RRRVAAKREVLADPKYGSQILAKFMNHVMESGKKAVAERIVYGALDKVKE
RGKADPLETFEKALDAIAPLVEVKSRRVGGATYQVPVEVRPSRRNALAMR
WLVDFARKRGEKSMALRLAGELLDAAEGKGAAVKKREDVHRMAEANKAFS
HYRF
Ligand information
>6spe Chain a (length=1526) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
aacugaagaguuugaucauggcucagauugaacgcuggcggcaggccuaa
cacaugcaagucgagcggauaaagggagcuugcuccuggauucagcggcg
gacgggugaguaaugccuaggaaucugccugguagugggggauaacgucc
ggaaacgggcgcuaauaccgcauacguccugagggagaaagugggggauc
uucggaccucacgcuaucagaugagccuaggucggauuagcuaguuggug
ggguaaaggccuaccaaggcgacgauccguaacuggucugagaggaugau
cagucacacuggaacugagacacgguccagacuccuacgggaggcagcag
uggggaauauuggacaaugggcgaaagccugauccagccaugccgcgugu
gugaagaaggucuucggauuguaaagcacuuuaaguugggaggaagggca
guaaguuaauaccuugcuguuuugacguuaccaacagaauaagcaccggc
uaacuucgugccagcagccgcgguaauacgaagggugcaagcguuaaucg
gaauuacugggcguaaagcgcgcguaggugguucagcaaguuggauguga
aauccccgggcucaaccugggaacugcauccaaaacuacugagcuagagu
acgguagagggugguggaauuuccuguguagcggugaaaugcguagauau
aggaaggaacaccaguggcgaaggcgaccaccuggacugauacugacacu
gaggugcgaaagcguggggagcaaacaggauuagauacccugguagucca
cgccguaaacgaugucgacuagccguugggauccuugagaucuuaguggc
gcagcuaacgcgauaagucgaccgccuggggaguacggccgcaagguuaa
aacucaaaugaauugacgggggcccgcacaagcgguggagcaugugguuu
aauucgaagcaacgcgaagaaccuuaccuggccuugacaugcugagaacu
uuccagagauggauuggugccuucgggaacucagacacaggugcugcaug
gcugucgucagcucgugucgugagauguuggguuaagucccguaacgagc
gcaacccuuguccuuaguuaccagcaccucgggugggcacucuaaggaga
cugccggugacaaaccggaggaagguggggaugacgucaagucaucaugg
cccuuacggccagggcuacacacgugcuacaauggucgguacaaaggguu
gccaagccgcgagguggagcuaaucccauaaaaccgaucguaguccggau
cgcagucugcaacucgacugcgugaagucggaaucgcuaguaaucgugaa
ucagaaugucacggugaauacguucccgggccuuguacacaccgcccguc
acaccaugggaguggguugcuccagaaguagcuagucuaaccgcaagggg
gacgguuaccacggagugauucaugacuggggugaagucguaacaaggua
gccguaggggaaccugcggcuggauc
.......<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<.....
<<<.<<<..<<<..<<.<<....<.<<<<..>>>>.>....>>.>>>>>.
.....<<.......<<<<<<<..<<...<<<<<<<<<.<<.....<<<<<
<....>>>>>>......>>.>.....<<<....>>>....<<<<<<..<<
....>>>>>>>>>>>>>>>>..>>.>>>>>>><<<....<<<..<<<<<<
<<.......>>>>>>>>>>>......>>>..<<<<<<<<....>>>>...
>>>>.>>.<<<<<.<.........>>>>>>.<<<<....>>>>...>>>>
>>.........<<<....<<<<....>>>>..>>>..>>.>>>>>>..<<
<<......<<<<<..>>>>>.....>>>>...<.<<<<<......<<<<<
<<<<<.......>>>>>>>>>>........>>>>>....>..<<<<<(((
...<<<<<.....<<.)))>>.......>>>>>>>>>>..>>>>>>>>>.
.........<<<((.....<<<<...<<<.<<<<<<..<<<<<<<<<<..
....<<<<<<.....>>>>>>....>>>>>>>>..>>.>>>>>>...<<<
<<<<<...<<<<<<<....<<<<<<<<<..<<<......>>>.....>>>
>>>>>>...........<<....>>.>>>>>>>..>>>>.>>>>...>>>
...>>>>....<<<<<<...<<...<<<<.<.....>.>>>>...>>>>>
>>>..........<<<<<<..<<<<<<<<<<<<.....>>>>>>>>>>>>
...<<..))>>.....>>>>>>.>>>.<<<......<<<<....>>>>..
..>>>..)))).]<<<<<.<<<<<<<.<<.<<<<<<..<<<<<<<<<<..
....<<........>>..........<<<<<<<......<<<<<<<....
..<<<....>>>.......<<....>>..>>>>>.>>.<<<.<<<..<<<
<<<.......<<<<<<<<<....>>>..<<<<......>>>>..>>>>>>
.....<<<<.<<<<<<<...<<..<<<.....>>>>>....>>>>>>>..
...<<<<<.....>>>>>........>>>>.........>>>...>>>>>
>>>>...>>>>>>>...>>.>>>>>>>>.....<<<<<<<.....<<<..
<<...<<<....>>>...>>....>>>.....>>>>>>>......<....
<<<<<<<........>>>>>>>....>.....>>>>>>....<<<<<<<.
........>>>>>>>......>>...>>>>>>>>>>.>>....<..<<.<
.<<<<.<<<..<<<<<<<<<<<<....<<<<<<.<<<<..<<....>>.>
>>>>>>>>>...>>>>>>>>>>>>..>>>.>>>>..>.>>...>.....<
<<<<<<<<....>>>>>>>>>.....
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6spe Structure ofPseudomonas aeruginosaribosomes from an aminoglycoside-resistant clinical isolate.
Resolution3.6 Å
Binding residue
(original residue number in PDB)		R3 A7 K25 N28 V30 M31 E32 S33 K35 R41 R79 R92 R95 R109 K114 S115 M116
Binding residue
(residue number reindexed from 1)		R1 A5 K23 N26 V28 M29 E30 S31 K33 R39 R77 R90 R93 R107 K112 S113 M114
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0000049 tRNA binding
GO:0003723 RNA binding
GO:0003729 mRNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0000028 ribosomal small subunit assembly
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6spe, PDBe:6spe, PDBj:6spe
PDBsum6spe
PubMed31611393
UniProtA0A2V3F2U6

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