Structure of PDB 8ghu Chain f Binding Site BS01

Receptor Information
>8ghu Chain f (length=100) Species: 562 (Escherichia coli) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MRHYEIVFMVHPDQSEQVPGMIERYTAAITGAEGKIHRLEDWGRRQLAYP
INKLHKAHYVLMNVEAPQEVIDELETTFRFNDAVIRSMVMRTKHAVTEAS
Ligand information
>8ghu Chain a (length=1532) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
aauugaagaguuugaucauggcucagauugaacgcuggcggcaggccuaa
cacaugcaagucgaacgguaacaggaagaagcuugcuucuuugcugacga
guggcggacgggugaguaaugucugggaaacugccugauggagggggaua
acuacuggaaacgguagcuaauaccgcauaacgucgcaagaccaaagagg
gggaccuucgggccucuugccaucggaugugcccagaugggauuagcuag
uaggugggguaacggcucaccuaggcgacgaucccuagcuggucugagag
gaugaccagccacacuggaacugagacacgguccagacuccuacgggagg
cagcaguggggaauauugcacaaugggcgcaagccugaugcagccaugcc
gcguguaugaagaaggccuucggguuguaaaguacuuucagcggggagga
agggaguaaaguuaauaccuuugcucauugacguuacccgcagaagaagc
accggcuaacuccgugccagcagccgcgguaauacggagggugcaagcgu
uaaucggaauuacugggcguaaagcgcacgcaggcgguuuguuaagucag
augugaaauccccgggcucaaccugggaacugcaucugauacuggcaagc
uugagucucguagagggggguagaauuccagguguagcggugaaaugcgu
agagaucuggaggaauaccgguggcgaaggcggcccccuggacgaagacu
gacgcucaggugcgaaagcguggggagcaaacaggauuagauacccuggu
aguccacgccguaaacgaugucgacuuggagguugugcccuugaggcgug
gcuuccggagcuaacgcguuaagucgaccgccuggggaguacggccgcaa
gguuaaaacucaaaugaauugacgggggcccgcacaagcgguggagcaug
ugguuuaauucgaugcaacgcgaagaaccuuaccuggucuugacauccac
ggaaguuuucagagaugagaaugugccuucgggaaccgugagacaggugc
ugcauggcugucgucagcucguguugugaaauguuggguuaagucccgca
acgagcgcaacccuuauccuuuguugccagcgguccggccgggaacucaa
aggagacugccagugauaaacuggaggaagguggggaugacgucaaguca
ucauggcccuuacgaccagggcuacacacgugcuacaauggcgcauacaa
agagaagcgaccucgcgagagcaagcggaccucauaaagugcgucguagu
ccggauuggagucugcaacucgacuccaugaagucggaaucgcuaguaau
cguggaucagaaugccacggugaauacguucccgggccuuguacacacag
ccccucacaccaugggaguggguugcaaaagaaguagguagcuuaaccuu
cgggagggcgcuuaccacuuugugauucaugacuggggugaagucguaac
aagguaaccguaggggaaccugcgguuggauc
.......<<<<....((((.>>>>.<<<<.<<<<<..<<<<<<<......
<<<.<<<...<<..<<.<...<<..<<............>.>..>>.>..
>>>>.......<<.......<<<<<<<..<<....<<<<<<.<..<<...
<<<<<<......>>>>>.>....>>.>.....<<<....>>.>...<<<<
<...<......>.>>>>>.>>>>>>...>>.>>>>>>><<<....<<<..
.<<<<<<.........>>>>>>.>>>......>>>..<<<<<<<<....>
>>...>>>>>.>>.<<<<.<<.........>>>>>>..<<<....>>>..
..>>>>>>.........<<...<<<<<<....>>>>.>>>>...>.>>>>
>>..<<<<.......<..<...>.>......>>>>......<<<<.....
.<<.<<<<<<<.......>>>>>>>..>>.......>>>>........<<
<<<(((...<<<<<........))).........>>>>>>>>>>..>>>>
>>>>>...........<.((.....<<<..<.<<<..<<<<<<.<<<<<<
<<<<......<<<<<<.....>>>>>>....>>>>>>>..>>>>>>>>>.
...<<<..<.....<<<<<<<.....<<<<<<....<<<......>>>..
.....>>>>>.>....................>>>>>>>....>...>>>
...>>>..>.>>>....<<<<<<...<<...<<<<.........>>>>..
.>>>>>>>>..........<<<<<<.<<<<<<<<<<<<<.....>>>>>>
>>>>>>>..<<..))>>.....>>>>>>..>..<<<.......<<<....
>>>.....>>>..))))..<<<<<.<<<<<....................
..................................<<.<.........<<.
<<..<<<.<<......>>.>>>.............>>.>>....<<....
........<.......<<<<..<<<....>>>..<<<<......>>>>..
..>>>>.....<<<.......<........<<<.....>>>.......>.
.........<<.<<.....>>.>>.........>>>..........>...
........>>....>.>>................................
......<..................>........................
......<<<................>>>......................
..................................>>>>>>>>.>>.....
.......<<<<.<<...<<<<<.<<<<<<....<<<<<<.<<<<..<<..
..>>.>>>>>>>>>>...>>>>>>.>>>>>...>>.>>>>..........
.....<<<<<<<<<....>>>>>>>>>.....
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8ghu 30S subunit recognition and G1405 modification by the aminoglycoside-resistance 16S ribosomal RNA methyltransferase RmtC.
Resolution3.0 Å
Binding residue
(original residue number in PDB)		Y4 Q68 R79 R86 V89 M90
Binding residue
(residue number reindexed from 1)		Y4 Q68 R79 R86 V89 M90
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8ghu, PDBe:8ghu, PDBj:8ghu
PDBsum8ghu
PubMed36993224
UniProtP02358|RS6_ECOLI Small ribosomal subunit protein bS6 (Gene Name=rpsF)

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