Structure of PDB 8auv Chain f Binding Site BS01

Receptor Information
>8auv Chain f (length=141) Species: 4097 (Nicotiana tabacum) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AVESVQCFGRKKTAVAVTHCKRGRGLIKINGVPIELVQPEILRYKAFEPI
LLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQQK
KEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR
Ligand information
>8auv Chain h (length=1626) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uaccugguugauccugccaguagucauaugcuugucucaaagauuaagcc
augcauguguaaguaugaacaaauucagacugugaaacugcgaauggcuc
auuaaaucaguuauaguuuguuugaugguaucuacuacucggauaaccgu
aguaauucuagagcuaauacgugcaacaaaccccgacuucuggaagggau
gcauuuauuagauaugcgaugauucaugauaacucgacggaucgcacggc
cgccggcgacgcaucauucaaauuucugcccuaucaacuuucgaugguag
gauaguggccuaccaugguggugacgggugacggagaauuaggguucgau
uccggagagggagccugagaaacggcuaccacauccaaggaaggcagcag
gcgcgcaaauuacccaauccugacacggggagguagugacaauaaauaac
aauaccggcugguaauuggaaugaguacaaucuaaaucccuuaacgagga
uccauuggagggcaagucuggugccagcagccgcgguaauuccagcucca
auagcguauauuuaaguuguugcaguuaaaaagcucguaguuggacuuug
ggaugucccguuacuuugaagaaauuagagugcucaaagcaagccuacgc
ucuguauacauuagcaugggauaacauuauaggauuucgguccuauuucg
ggaucggaguaaugauuaacagggacagucgggggcauucguauuucaua
gucagaggugaaauucuuggauuuaugaaagacgaacaacugcgaaagca
uuugccaaggauguuuucauuaaucaagaacgaaaguugggggcucgaag
acgaucagauaccguccuagucucaaccauaaacgaugccgaccagggau
cggcggauguugcuaggacuccgccggcaccuuaugagaaaucaaaguuu
uuggguuccggggggaguauggucgcaaggcugaaacuuaaaggaauuga
cggaagggcaccaccaggaguggagccugcggcuuaauuugacucaacac
ggggaaacuuaccagguccagacauaguaaggauugacagacugagagcu
cuuucuugauucuaugggugguggugcauggccguucuuaguugguggag
cgauuugucugguuaauuccguuaacgaacgagaccucagccugcuaacu
agcuaugcggagguaucccuucgcggccagcuucuuagagggacuacggc
cuuuuaggccgcggaaguuugaggcaauaacaggucugugaugcccuuag
auguucugggccgcacgcgcgcuacacugauguauucaacgaguuuauag
ccuuggccgacaggcccggguaaucuuugaaauuucaucgugauggggau
agaucauugcaauuguuggucuucaacgaggaauuccuaguaagcgcgag
ucaucagcucgcguugacuacgucccugcccuuuguacacaccgcccguc
gcuccuaccgauugaaugauccggugaaauguucggaucgcgcgagaagu
ccauugaaccuuaucauuuagaggaaggagaagucguaacaagguuuccg
uaggugaaccugcggaaggaucauug
...<<<<<.[.((((>>>>>.<<<.<<<<<<...<.<...<......<<<
.<<<..<<....<<....<<...........>>...>>.>>......<<.
.......<<<..<<..<<....<<<<<............<<.....<..<
<<.....>>>..>......>>........<.<<<..<<...>>..>>>.>
....<<<<<<................>>>>>>.........<<<<.<<<<
.>>>>>>>>..>>>>>...>>>>..>>>.<<<....<<<....<<<<<<<
<.......>>>>>>>>>>>......>>>...<<<.<<<<....>>>>...
.>>>.>>.<<.<<<..........>>>.>>.<.<<....>>.>...>>>>
>>.........<<<....<<<.....>>>..>>>..>....>.>.....<
<<<<<<<..>>>>>.>>>......<<..<...........>..>>.....
....<<<<<((....<.<<<<.....<<..))>>.......>>>>>>>>>
>..>>>>>>>>>..........<.<((.....<.<<...<<<.<<.....
<<<..>>>.<<<<<<.<<.......<<...<.......>..<<<....>>
>.....>>......>>.>>..>>>>........<<<<<<<<<<<.....>
>>>>>>>>>>.....>>....<<<<<<.<<...<<<<..<<..<<<<<<<
<...<<<......>>>......>>>>>>>>..>>.......<<....>>.
..>>>>...>>>>>.>>>...>>>...>>.>....<<<<<<<...<...<
<<<.........>>>>...>>>>>>>>..........<<<.<<.<<<..<
<<<<<<<.<<<.<..>>>>>>>>>>>>..>>>...<<..))>>...>>..
...>>>.>.>.<<<......<<<<....>>>>....>>>..)))).]<<<
<<.<<<<<<<..<<.<<<<<<..<<<.<<<<<.......<<........>
>..........<<<<<......<<<<<........<<.<<<........>
>>.>>......>>>>>...<<.<<<..<<.<<<<<<....<<<.<<<<..
....>>...<<<......>>>...>>.>>>....<<<<<.<<..<<<<..
<<<<.<<<<<<<<....>>>>>>>>...>>>>..>>>>.>>.....<<<<
<.....>>>>>........>>>>>....>>>.>>>.....>>>>>>>...
....>>>>>....>.>>>>.>>>.....<<<<.<.......<<.......
<<<.<<<<....>>>>.>>>....>>.......>.>>>>......<....
<<<<<<..........>>>>>>....>.....>>>>>>....<<<<<<<<
.......>>>>>>>>......>>...>>>>>>>>>>.>>....<..<<.<
.<<<<<.<<....<<<<<<<..<<<..<<<<..<...<<<<>>>>...>.
.>>>>..>>>..>>>>>>>...>>.>>>>>..>.>>...>.....<<<<<
<<<<....>>>>>>>>>.........
Receptor-Ligand Complex Structure
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PDB8auv Structure of the actively translating plant 80S ribosome at 2.2 angstrom resolution.
Resolution2.38 Å
Binding residue
(original residue number in PDB)
Q15 C16 F17 R19 K21 T22 V24 V26 H28 K37 E49 R73 R75 G78 G79 G80 H81 T82 S83 Q84 R121 V125 R129 R130 C131 E132 P133 K134 K135 F136 G137 R139 G140 R142 A143 R144 F145 Q146 K147 S148 Y149 R150
Binding residue
(residue number reindexed from 1)
Q6 C7 F8 R10 K12 T13 V15 V17 H19 K28 E40 R64 R66 G69 G70 G71 H72 T73 S74 Q75 R112 V116 R120 R121 C122 E123 P124 K125 K126 F127 G128 R130 G131 R133 A134 R135 F136 Q137 K138 S139 Y140 R141
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
Biological Process
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:8auv, PDBe:8auv, PDBj:8auv
PDBsum8auv
PubMed37156858
UniProtA0A1S4AU23

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