Structure of PDB 7osm Chain eS31 Binding Site BS01

Receptor Information

>7osm Chain eS31 (length=36) Species: 4932 (Saccharomyces cerevisiae)

KHKKVKLAVLRECSNPTCGAGVFLANHKDRLYCGKC

Ligand information

>7osm Chain 18S (length=1732)

uaucugguugauccugccaguagucauaugcuugucucaaagauuaagcc
augcaugucuaaguauaagcaauacagugaaacugcgaauggcucauuaa
aucaguuaucguuuauuugauaguucccuacaugguauaacugugguaau
ucuagagcuaauacaugcuuaaaaucucagagauguauuuauuagauaaa
aaugaugauucauaauaacuuuucgaaucgcauggccuugugcuggcgau
gguucauucaaauuucugcccuaucaacuuucgaugguaggauaguggcc
uaccaugguuucaacggguaacggggaauaaggguucgauuccggagagg
gagccugagaaacggcuaccacauccaaggaaggcagcaggcgcgcaaau
uacccaauccuaauucagggagguagugacaauaaauaacgauacagggc
ccauucgggucuuguaauuggaaugaguacaauguaaauaccuuaacgag
gaacaauuggagggcaagucuggugccagcagccgcgguaauuccagcuc
caauagcguauauuaaaguuguugcaguuaaaaagcucguaguugaacuu
ugggcccgguuggccgguauuuccaacggggccuuuccuucuggcuaacc
uugaguccuuguggcucuuggcgaaccaggacuuuuacuuugaaaaaauu
agaguguucaaagcaggcguauugcucgaauauauuagcauggaauaaua
gaauaggacguuugguucuauuuuucuaggaccaucguaaugauuaauag
ggacggucgggggcaucaguauucaauugucagaggugaaauucuuggau
uuauugaagacuaacuacugcgaaagcauuugccaaggacguuuucauua
aucaagaacgaaaguuaggggaucgaagaugaucagauaccgucguaguc
uuaaccauaaacuaugccgacuagggaucgggugguguuuuuuuaaugac
ccacucggcaccuuacgagaaaucaaagucuuuggguucuggggggagua
uggucgcaaggcugaaacuuaaaggaauugacggaagggcaccaccagga
guggagccugcggcuuaauuugacucaacacggggaaacucaccaggucc
agacacaauaaggauugacagauugagagcucuuucuugauuuugugggu
gguggugcauggccguucuuaguugguggagugauuugucugcuuaauug
cgauaacgaacgagaccuuaaccuacuaaauaguggugcuagcauuugcu
gguuauccacuucuuagagggacuaucgguuucaagccgauggaaguuug
aggcaauaacaggucugugaugcccuuagacguucugggccgcacgcgcg
cuacacugacggagccagcgagucuaaccuuggccgagaggucuugguaa
ucuugugaaacuccgucgugcuggggauagagcauuguaauuauugcucu
ucaacgaggaauuccuaguaagcgcaagucaucagcuugcguugauuacg
ucccugcccuuuguacacaccgcccgucgcuaguaccgauugaauggcuu
agugaggccucaggaucugcuuagagaagggggcaacuccaucucagagc
ggagaauuuggacaaacuuggucauuuagaggaacuaaaagucguaacaa
gguuuccguaggugaaccugcggaaggaucau

...<<<<<.[.((((>>>>><<<<.<<<<<<...<.<...<......<<<
.<<<..<<....<<....<<......>>...>>.>>......<<......
..<<<..<<..<<....<<<............<<......<<.<<<....
.>>>.>>......>>.........<<.....>>.....<<<<<<......
[...........>>>>>>.........<<<<..<<<.....>>>.>>>>.
...>>>...>>>>..>>>.<<<....<<<....<<<<<<<<.......>>
>>>>>>>>>......>>>...<<<.<<<<....>>>>....>>>.>>.<<
.<<<..........>>>.>>.<.<<....>>.>...>>>>>>........
.<<<....<<<.....>>>..>>>..>....>.>.....<<<.<<.<...
..........>..>>..>>>......<<..<...........>..>>...
......<<<<<((......<<<<.....<<..))>>.......>>>>.>>
>>>..>>>>>>>>>>.........<<<((.....<.<<...<<<.<<...
.<<<<<<.<<<<<.........>>>>>.>>>>>>.....<<<<<......
....<..........>.........>>>>>....<<<<<.<<.......<
<...<.......>..<<<.....>>>....>>......>>.>>..>>>..
.......<<...<<<<<<<<....].>>>>>>>>..>>.....>>....<
<<<<<.<<...<<<<..<<..<<<<<<.<...<<<......>>>......
>.>>>>>>..>>.......<<....>>...>>>>...>>>>>.>>>...>
>>...>>.>....<<<<<<<...<...<<<<.........>>>>...>>>
>>>>>..........<<<.<<.<<<..<<<<<<<<.<<<........>>>
>>>>>>>>..>>>...<<..))>>...>>.....>>>.>>>.<<<.....
.<<<<....>>>>....>>>..)))).]<<<<<.<<<<<<<..<<.<<<<
<<..<<<.<<<<........<<........>>..........<<<<<...
...<<<<<........<<.<<<........>>>.>>......>>>>>...
<<.<<<....<<<<<<.....<<<.<<<<......>>...<<<......>
>>...>>.>>>....<<<<..<<..<<<<..<<<<<.<<<<<<....>>>
>>>...>>>>>..>>>>.>>....<<<<<<.....>>>>>>........>
>>>.....>>.>>>...>...>>>>>.......>>>>>......>>>>.>
>>.....<<<<<<<......<<.....<<..<<<<....>>>>..>>...
.>>.......>>>>>>>...........<<<<<<..........>>>>>>
..........>>>>>>....<<<<<<<<.......>>>>>>>>......>
>...>>>>>>>>>>.>>....<..<<.<..<<<<.<<....<<<<<<<<.
<<<..<.<<......<<<<<<..........................>>>
>>>......>>.>..>>>.>>>>>>>>...>>.>>>>...>.>>...>..
...<<<<<<<<<....>>>>>>>>>.......

Receptor-Ligand Complex Structure

Structure summary

• PDB: 7osm Accuracy mechanism of eukaryotic ribosome translocation.
• Resolution: 3.0 Å
• Binding residue (original residue number in PDB): K94 H95 K96 K97 K99 L100 L103 G129 V130 F131 N134 H135 R138 Y140 G142 K143
• Binding residue (residue number reindexed from 1): K1 H2 K3 K4 K6 L7 L10 G21 V22 F23 N26 H27 R30 Y32 G34 K35

Gene Ontology

--> -->

UnboundLocalError

Python 3.6.8: /usr/bin/python3 Thu Nov 28 11:36:04 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1435     title=pdb2title(pdbid)

   1436     if bs.startswith("BS"):

=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

   1438     else:

   1439         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '7osm', asym_id = 'eS31', bs = 'BS01', title = 'Accuracy mechanism of eukaryotic ribosome translocation.'

 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='7osm', asym_id='eS31', bs='BS01', title='Accuracy mechanism of eukaryotic ribosome translocation.')

   1295         display_ec(ec,csaOrig,csaRenu)

   1296     if go:

=> 1297         display_go(go,uniprot,pdbid,asym_id)

   1298     return pubmed,uniprot

   1299 

global display_go = <function display_go>, go = '0003735,0005840,0006412', uniprot = '', pdbid = '7osm', asym_id = 'eS31'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412', uniprot='', pdbid='7osm', asym_id='eS31')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>