Structure of PDB 7osm Chain eS26 Binding Site BS01

Receptor Information

>7osm Chain eS26 (length=94) Species: 4932 (Saccharomyces cerevisiae)

PKKRASNGRNKKGRGHVKPVRCVNCSKSIPKDKAIKRMAIRNIVEAAAVR
DLSEASVYPEYALPKTYNKLHYCVSCAIHARIVRVRSREDRKNR

Ligand information

>7osm Chain 18S (length=1732)

uaucugguugauccugccaguagucauaugcuugucucaaagauuaagcc
augcaugucuaaguauaagcaauacagugaaacugcgaauggcucauuaa
aucaguuaucguuuauuugauaguucccuacaugguauaacugugguaau
ucuagagcuaauacaugcuuaaaaucucagagauguauuuauuagauaaa
aaugaugauucauaauaacuuuucgaaucgcauggccuugugcuggcgau
gguucauucaaauuucugcccuaucaacuuucgaugguaggauaguggcc
uaccaugguuucaacggguaacggggaauaaggguucgauuccggagagg
gagccugagaaacggcuaccacauccaaggaaggcagcaggcgcgcaaau
uacccaauccuaauucagggagguagugacaauaaauaacgauacagggc
ccauucgggucuuguaauuggaaugaguacaauguaaauaccuuaacgag
gaacaauuggagggcaagucuggugccagcagccgcgguaauuccagcuc
caauagcguauauuaaaguuguugcaguuaaaaagcucguaguugaacuu
ugggcccgguuggccgguauuuccaacggggccuuuccuucuggcuaacc
uugaguccuuguggcucuuggcgaaccaggacuuuuacuuugaaaaaauu
agaguguucaaagcaggcguauugcucgaauauauuagcauggaauaaua
gaauaggacguuugguucuauuuuucuaggaccaucguaaugauuaauag
ggacggucgggggcaucaguauucaauugucagaggugaaauucuuggau
uuauugaagacuaacuacugcgaaagcauuugccaaggacguuuucauua
aucaagaacgaaaguuaggggaucgaagaugaucagauaccgucguaguc
uuaaccauaaacuaugccgacuagggaucgggugguguuuuuuuaaugac
ccacucggcaccuuacgagaaaucaaagucuuuggguucuggggggagua
uggucgcaaggcugaaacuuaaaggaauugacggaagggcaccaccagga
guggagccugcggcuuaauuugacucaacacggggaaacucaccaggucc
agacacaauaaggauugacagauugagagcucuuucuugauuuugugggu
gguggugcauggccguucuuaguugguggagugauuugucugcuuaauug
cgauaacgaacgagaccuuaaccuacuaaauaguggugcuagcauuugcu
gguuauccacuucuuagagggacuaucgguuucaagccgauggaaguuug
aggcaauaacaggucugugaugcccuuagacguucugggccgcacgcgcg
cuacacugacggagccagcgagucuaaccuuggccgagaggucuugguaa
ucuugugaaacuccgucgugcuggggauagagcauuguaauuauugcucu
ucaacgaggaauuccuaguaagcgcaagucaucagcuugcguugauuacg
ucccugcccuuuguacacaccgcccgucgcuaguaccgauugaauggcuu
agugaggccucaggaucugcuuagagaagggggcaacuccaucucagagc
ggagaauuuggacaaacuuggucauuuagaggaacuaaaagucguaacaa
gguuuccguaggugaaccugcggaaggaucau

...<<<<<.[.((((>>>>><<<<.<<<<<<...<.<...<......<<<
.<<<..<<....<<....<<......>>...>>.>>......<<......
..<<<..<<..<<....<<<............<<......<<.<<<....
.>>>.>>......>>.........<<.....>>.....<<<<<<......
[...........>>>>>>.........<<<<..<<<.....>>>.>>>>.
...>>>...>>>>..>>>.<<<....<<<....<<<<<<<<.......>>
>>>>>>>>>......>>>...<<<.<<<<....>>>>....>>>.>>.<<
.<<<..........>>>.>>.<.<<....>>.>...>>>>>>........
.<<<....<<<.....>>>..>>>..>....>.>.....<<<.<<.<...
..........>..>>..>>>......<<..<...........>..>>...
......<<<<<((......<<<<.....<<..))>>.......>>>>.>>
>>>..>>>>>>>>>>.........<<<((.....<.<<...<<<.<<...
.<<<<<<.<<<<<.........>>>>>.>>>>>>.....<<<<<......
....<..........>.........>>>>>....<<<<<.<<.......<
<...<.......>..<<<.....>>>....>>......>>.>>..>>>..
.......<<...<<<<<<<<....].>>>>>>>>..>>.....>>....<
<<<<<.<<...<<<<..<<..<<<<<<.<...<<<......>>>......
>.>>>>>>..>>.......<<....>>...>>>>...>>>>>.>>>...>
>>...>>.>....<<<<<<<...<...<<<<.........>>>>...>>>
>>>>>..........<<<.<<.<<<..<<<<<<<<.<<<........>>>
>>>>>>>>..>>>...<<..))>>...>>.....>>>.>>>.<<<.....
.<<<<....>>>>....>>>..)))).]<<<<<.<<<<<<<..<<.<<<<
<<..<<<.<<<<........<<........>>..........<<<<<...
...<<<<<........<<.<<<........>>>.>>......>>>>>...
<<.<<<....<<<<<<.....<<<.<<<<......>>...<<<......>
>>...>>.>>>....<<<<..<<..<<<<..<<<<<.<<<<<<....>>>
>>>...>>>>>..>>>>.>>....<<<<<<.....>>>>>>........>
>>>.....>>.>>>...>...>>>>>.......>>>>>......>>>>.>
>>.....<<<<<<<......<<.....<<..<<<<....>>>>..>>...
.>>.......>>>>>>>...........<<<<<<..........>>>>>>
..........>>>>>>....<<<<<<<<.......>>>>>>>>......>
>...>>>>>>>>>>.>>....<..<<.<..<<<<.<<....<<<<<<<<.
<<<..<.<<......<<<<<<..........................>>>
>>>......>>.>..>>>.>>>>>>>>...>>.>>>>...>.>>...>..
...<<<<<<<<<....>>>>>>>>>.......

Receptor-Ligand Complex Structure

Structure summary

• PDB: 7osm Accuracy mechanism of eukaryotic ribosome translocation.
• Resolution: 3.0 Å
• Binding residue (original residue number in PDB): P2 K3 K4 R5 A6 S7 N8 G9 R10 N11 K13 G14 R15 H17 K19 K28 K32 K34 K37 R38 K70 V75 S76 I79 H80 R82 V84 R85 R87 S88 R89 R92 K93 N94 R95
• Binding residue (residue number reindexed from 1): P1 K2 K3 R4 A5 S6 N7 G8 R9 N10 K12 G13 R14 H16 K18 K27 K31 K33 K36 R37 K69 V74 S75 I78 H79 R81 V83 R84 R86 S87 R88 R91 K92 N93 R94

Gene Ontology

--> -->

UnboundLocalError

Python 3.6.8: /usr/bin/python3 Thu Nov 28 11:43:07 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1435     title=pdb2title(pdbid)

   1436     if bs.startswith("BS"):

=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

   1438     else:

   1439         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '7osm', asym_id = 'eS26', bs = 'BS01', title = 'Accuracy mechanism of eukaryotic ribosome translocation.'

 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='7osm', asym_id='eS26', bs='BS01', title='Accuracy mechanism of eukaryotic ribosome translocation.')

   1295         display_ec(ec,csaOrig,csaRenu)

   1296     if go:

=> 1297         display_go(go,uniprot,pdbid,asym_id)

   1298     return pubmed,uniprot

   1299 

global display_go = <function display_go>, go = '0003735,0005840,0006412', uniprot = '', pdbid = '7osm', asym_id = 'eS26'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412', uniprot='', pdbid='7osm', asym_id='eS26')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>