Structure of PDB 7osm Chain eL34 Binding Site BS01

Receptor Information
>7osm Chain eL34 (length=109) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AQRVTFRRRNPYNTRSNKIKVVKTPGGILRAQHVKKLATRPKCGDCGSAL
QGISTLRPRQYATVSKTHKTVSRAYGGSRCANCVKERIIRAFLIEEQKIV
KKVVKEQTE
Ligand information
>7osm Chain 25S (length=3162) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uugaccucaaaucagguaggaguacccgcugaacuuaagcauaucaauaa
gcggaggaaaagaaaccaaccgggauugccuuaguaacggcgagugaagc
ggcaaaagcucaaauuugaaaucugguaccuucggugcccgaguuguaau
uuggagagggcaacuuuggggccguuccuugucuauguuccuuggaacag
gacgucauagagggugagaaucccguguggcgaggagugcgguucuuugu
aaagugccuucgaagagucgaguuguuugggaaugcagcucuaagugggu
gguaaauuccaucuaaagcuaaauauuggcgagagaccgauagcgaacaa
guacagugauggaaagaugaaaagaacuuugaaaagagagugaaaaagua
cgugaaauuguugaaagggaagggcauuugaucacacugggccagcauca
guuuugguggcaggauaaauccauaggaauguagcuugccucgguaagua
uuauagccugugggaauacugccagcugggacugaggacugcgacguaag
ucaaggaugcuggcaaugguuauaugccgcccgucuugaaacacggacca
aggagucuaacgucuaugcgaguguuuggguguaaaacccauacgcguaa
ugaaagugaacguagguuggggccucgcaagaggugcacaaucgaccgau
ccugaugucuucggauggauuugaguaagagcauagcuguugggacccga
aagauggugaacuaugccugaauagggugaagccagaggaaacucuggug
gaggcucguagcgguucugacgugcaaaucgaucgucgaauuuggguaua
ggggcgaaagacuaaucgaaccaucuaguagcugguuccugccgaaguuu
cccucaggauagcagaagcucguaucaguuuuaugagguaaagcgaauga
uuagagguuccggggugaccuugaccuauucucaaacuuuaaauauguaa
gaaguccuuguuacuuaauugaacguggacauuugaaugaagagcuuuua
gugggccauuuuugguaagcagaacuggcgaugcgggaugaaccgaacgu
agaguuaaggugccggaauacacgcucaucagacaccacaaaagguguua
guucaucuagacagccggacgguggccauggaagucggaauccgcuaagg
aguguguaacaacucaccggccgaaugaacuagcccugaaaauggauggc
gcucaagcguguuaccuauacucuaccgucaggguugauaugaugcccug
acgaguaggcaggcguggaggucagugacgaagccuagaccguaaggucg
ggucgaacggccucuagugcagaucuuggugguaguagcaaauauucaaa
ugagaacuuugaagacugaaguggggaaagguuccacgucaacagcaguu
ggacguggguuagucgauccuaagagauggggaagcuccguuucaaaggc
cugauuuuaugcaggccaccaucgaaagggaauccgguuaagauuccgga
accuggauauggauucuucacgguaacguaacugaauguggagacgucgg
cgcgagcccugggaggaguuaucuuuucuucuuaacagcuuaucaccccg
gaauugguuuauccggagauggggucuuauggcuggaagaggccagcacc
uuugcuggcuccggugcgcuugugacggcccgugaaaauccacaggaagg
aauaguuuucaugccaggucguacugauaaccgcagcaggucuccaaggu
gaacagccucuaguugauagaauaauguagauaagggaagucggcaaaau
agauccguaacuucgggauaaggauuggcucuaagggucgaacgaucaac
uuagaacugguacggacaaggggaaucugacugucuaauuaaaacauagc
auugcgauggucagaaagugauguugacgcaaugugauuucugcccagug
cucugaaugucaaagugaagaaauucaaccaagcgcggguaaacggcggg
aguaacuaugacucucuuaagguagccaaaugccucgucaucuaauuagu
gacgcgcaugaauggauuaacgagauucccacugucccuaucuacuaucu
agcgaaaccacagccaagggaacgggcuuggcagaaucagcggggaaaga
agacccuguugagcuugacucuaguuugacauugugaagagacauagagg
guaguggaaauuaccucuauguuucuuuacuuauucaaugaagcggagcu
ggaauucauuuuccacguucuagcauucaaggucccauucggggcugauc
cggguugaagacauugucagguggggaguuuggcuggggcggcacaucug
uuaaacgauaacgcagauguccuaaggggggcucauggagaacagaaauc
uccaguagaacaaaaggguaaaagcccccuugauuuugauuuucagugug
aauacaaaccaugaaaguguggccuaucgauccuuuagucccucggaauu
ugaggcuagaggugccagaaaaguuaccacagggauaacuggcuuguggc
agucaagcguucauagcgacauugcuuuuugauucuucgaugucggcucu
uccuaucauaccgaagcagaauucgguaagcguuggauuguucacccacu
aauagggaacgugagcuggguuuagaccgucgugagacagguuaguuuua
cccuacugaugaauguuaccgcaauaguaauugaacuuaguacgagagga
acaguucauucggauaauugguuuuugcggcugucugaucaggcauugcc
gcgaagcuaccauccgcuggauuauggcugaacgccucuaagucagaauc
caugcuagaacgcggugauuucuuugcuccacacaauauagauggauacg
aauaaggcguccuuguggcgucgcugaaccauagcaggcuagcaacggug
cacuuggcggaaaggccuugggugcuugcuggcgaauugcaaugucauuu
ugcguggggauaaaucauuuguauacgacuuagauguacaacgggguauu
guaagcaguagaguagccuugguuacgaucugcugagauuaagccuuugu
ugucugauuugu
........................<<<<<<.....<......>......>
>>>>.>...{.....<<....>>...<<<<......<<.....>>.....
>>>>...[[[...........<<.<<<<<<...>>>>>>.>>........
.....<<<<<<<.<<<<<<<<<<<<<<<<<<<<.....<<<<......>>
>>.(.......<<<......)>>>....>>>>>>>>..>>>>>>>>....
>>>>>>>>>>>........<<<<<<<........>>>>>>>.....((((
(..<<<<<<)))))..]]]....}..........................
...<<....>>...............<<<<....>>>>............
......................<<<<<.<<<<<.......<<<<<<<<<<
<<<<<<<<<<<<<.....<<<<<<<<<....<.<<<<<<....>>>>>>>
......>>>>>>>.>.>.>>>>>.>>>>>>>>>>........<<<....>
>>....>>>>>>>>...>>>>>.>>>>>..<<<<........>>>><<<<
<<...<<<<<<<.<<<<<<..<<<...<<<<.....>>>>...>>>...<
<....>>.......<<<<<..<<<<<....>>>>>...>>>>>.<<<<<<
<<...<......>...>>>.>>>.>>....>>>>>>.>>>>>>>.<<.<.
.<<<<<<<.....<<<<<<<<<..<<<....<<<<<<<....>>>>>>>.
....>>>...<<<..<<.<<........>>>>.>>>....>>>>>>>>>.
..<<.......>>......>>>>>>...>..>.>>..<<<<<<....<.<
<<....>>>.><<<<<<<<<<...<<<.<<<<<<<.....<<<....<<<
....<<<.................>>>....>>>..>.>>.....>>>>>
...<<<<.<<<<.<......>>>>>.>>>>.....>>>>>.>>>>>>>>.
>>..<<<<.<<<<<.....>>>>>.>>>>....<<<......>>>...<<
<<<<<..<<<<(((.....<<<<<<.....<<..........<<<.<<<<
<<<<<<.......<<<<<.<<....<<.........>>....>>......
...<<......>>...>>>>>...>>>>>>>>>>>>>..........)))
.>>...>>>>>>.>>>>..>>>>>>><<<<<<<<<.........>>>>>>
>>>....>>>>>><.<<<<<<<..<<......<<<<.<<<<....>>>>>
>>>...>>.>>>>>>>..>.....>>>>>><<.....<<.....<<<<<<
.......>>>>>><<<<.....<<<<<.<<...<<<<<<...<<.....>
>.>>>>>>....((<<<<<<...<<....<<<....>>>...........
.....................>>....>>...<<<<<........>>>>>
))<<<<..<<<<<<.....<<<....>>>.......<<<<<<...<<<<.
<<<<<<<.<<<<<<<<<<..{{{..>>>>>><...<<<<<....<<<<<<
....<<<.....>>>....>>>>>>.....>>>>>....><<<<<<<<..
..>>>>>>>>>>>>...>>>>>>>.>>>>.........>>>>>>......
....>>>..>>>.>>>>>>>>..>>.....<<......>>>>>>>.<<<<
.....>>>>..>>>>..<<<<.....<<<<<<<.<<..............
.<<<<<....<....>.....>>>>><<.<<<<<<<<<<....>>>>..>
>>>>>.>>............<<<<<<<<<..<<<.........>>>..<<
<<<<<....<<<<.....>>>>......>>>>>>>...<<..<<<..<<<
<<<....<<<....<<<<<....>>>>.>...>>>.>>>>..>>>>><<<
<<<.......>>>>>>........<...........<<<<<.......>>
>>>.....>.....>>....>>.>>>>>>>.....>>.>>>>>>>..>>>
>>>....>>....<<<<<........>>>>>....[[[[[..{{{.{{..
....[[[[.{{.[[[..<<<<<.<<<<<<<<..<<<<<<<<<<<<<<<<.
..............>>>>>>>>>>>>>>>>...<<<<<.....<<<<..<
<<<........>>>>...............<<<<<<....>>>>>>..>>
>>..>>>>>.....>>>>>>>>..>>>>>...<<<.....>>>..<<<<<
<...........>>>>>>..<<...<<<<<<<...<<<<<<.......>>
>>>>.....<<...(((>>....>>>>>>>...<<<.<<<<<.......>
>>>.>>>>.<<<....>>>.>>))).......((((((..((((.>>>>>
>))))))))))..........]]]...}}]]]].......<<.<.<.<<<
<<<...<<.......>>...>>>>>>...>>.>.>.......<<<<<.<<
<<<<..<.<<<<<<<......>>>>>>>...>.<<<.........>>>..
...>>>>>..>...>>>.>>....<<<<<<<....>>>.>>>>....}}.
.}}}.]]]]]....<<<<<<<<..<<<<.<.<<<<<<.............
..>>>>>>.><<<<<...<<<<....<<<<<<<<<<}}}.>>>>>..>>>
>>...>>>>..>>>>>.<<<<...<<<<<...........>>>>>...>>
>>.>>>>....>>>>>>>>.......<<<<<<.<<<.<<....<<.....
.....<<<<<<.....>>>>>>......>>.......<<<<<<...<<<<
<.<..<<<......>>>..>.>>>>>.>>>>>>.............>>.>
>>.>>>>>>..<<<<<.<.............>.....<<<<<<<<<.<<<
....<<<<....<<<<<....>>>>>...>>>>...>>>....>>>>.>>
>>>..>>>>>..
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7osm Accuracy mechanism of eukaryotic ribosome translocation.
Resolution3.0 Å
Binding residue
(original residue number in PDB)		A2 R4 V5 T6 F7 R8 R10 N11 P12 Y13 N14 T15 S17 K19 K24 T25 P26 G27 R31 K37 L38 T40 R41 P42 K43 G45 Q52 G53 S55 T56 R58 P59 R60 Y62 A63 T64 S66 K67 T68 K70 V72 S73 R74 A75 Y76 G78 S79 R80 A82 R88 R91 A92 I95 E96 K102
Binding residue
(residue number reindexed from 1)		A1 R3 V4 T5 F6 R7 R9 N10 P11 Y12 N13 T14 S16 K18 K23 T24 P25 G26 R30 K36 L37 T39 R40 P41 K42 G44 Q51 G52 S54 T55 R57 P58 R59 Y61 A62 T63 S65 K66 T67 K69 V71 S72 R73 A74 Y75 G77 S78 R79 A81 R87 R90 A91 I94 E95 K101
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sun Dec 1 09:03:51 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '7osm', asym_id = 'eL34', bs = 'BS01', title = 'Accuracy mechanism of eukaryotic ribosome translocation.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='7osm', asym_id='eL34', bs='BS01', title='Accuracy mechanism of eukaryotic ribosome translocation.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003735,0005840,0006412', uniprot = '', pdbid = '7osm', asym_id = 'eL34'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412', uniprot='', pdbid='7osm', asym_id='eL34')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>