Structure of PDB 7osm Chain eL32 Binding Site BS01

Receptor Information
>7osm Chain eL32 (length=127) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ASLPHPKIVKKHTKKFKRHHSDRYHRVAENWRKQKGIDSVVRRRFRGNIS
QPKIGYGSNKKTKFLSPSGHKTFLVANVKDLETLTMHTKTYAAEIAHNIS
AKNRVVILARAKALGIKVTNPKGRLAL
Ligand information
>7osm Chain 25S (length=3162) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uugaccucaaaucagguaggaguacccgcugaacuuaagcauaucaauaa
gcggaggaaaagaaaccaaccgggauugccuuaguaacggcgagugaagc
ggcaaaagcucaaauuugaaaucugguaccuucggugcccgaguuguaau
uuggagagggcaacuuuggggccguuccuugucuauguuccuuggaacag
gacgucauagagggugagaaucccguguggcgaggagugcgguucuuugu
aaagugccuucgaagagucgaguuguuugggaaugcagcucuaagugggu
gguaaauuccaucuaaagcuaaauauuggcgagagaccgauagcgaacaa
guacagugauggaaagaugaaaagaacuuugaaaagagagugaaaaagua
cgugaaauuguugaaagggaagggcauuugaucacacugggccagcauca
guuuugguggcaggauaaauccauaggaauguagcuugccucgguaagua
uuauagccugugggaauacugccagcugggacugaggacugcgacguaag
ucaaggaugcuggcaaugguuauaugccgcccgucuugaaacacggacca
aggagucuaacgucuaugcgaguguuuggguguaaaacccauacgcguaa
ugaaagugaacguagguuggggccucgcaagaggugcacaaucgaccgau
ccugaugucuucggauggauuugaguaagagcauagcuguugggacccga
aagauggugaacuaugccugaauagggugaagccagaggaaacucuggug
gaggcucguagcgguucugacgugcaaaucgaucgucgaauuuggguaua
ggggcgaaagacuaaucgaaccaucuaguagcugguuccugccgaaguuu
cccucaggauagcagaagcucguaucaguuuuaugagguaaagcgaauga
uuagagguuccggggugaccuugaccuauucucaaacuuuaaauauguaa
gaaguccuuguuacuuaauugaacguggacauuugaaugaagagcuuuua
gugggccauuuuugguaagcagaacuggcgaugcgggaugaaccgaacgu
agaguuaaggugccggaauacacgcucaucagacaccacaaaagguguua
guucaucuagacagccggacgguggccauggaagucggaauccgcuaagg
aguguguaacaacucaccggccgaaugaacuagcccugaaaauggauggc
gcucaagcguguuaccuauacucuaccgucaggguugauaugaugcccug
acgaguaggcaggcguggaggucagugacgaagccuagaccguaaggucg
ggucgaacggccucuagugcagaucuuggugguaguagcaaauauucaaa
ugagaacuuugaagacugaaguggggaaagguuccacgucaacagcaguu
ggacguggguuagucgauccuaagagauggggaagcuccguuucaaaggc
cugauuuuaugcaggccaccaucgaaagggaauccgguuaagauuccgga
accuggauauggauucuucacgguaacguaacugaauguggagacgucgg
cgcgagcccugggaggaguuaucuuuucuucuuaacagcuuaucaccccg
gaauugguuuauccggagauggggucuuauggcuggaagaggccagcacc
uuugcuggcuccggugcgcuugugacggcccgugaaaauccacaggaagg
aauaguuuucaugccaggucguacugauaaccgcagcaggucuccaaggu
gaacagccucuaguugauagaauaauguagauaagggaagucggcaaaau
agauccguaacuucgggauaaggauuggcucuaagggucgaacgaucaac
uuagaacugguacggacaaggggaaucugacugucuaauuaaaacauagc
auugcgauggucagaaagugauguugacgcaaugugauuucugcccagug
cucugaaugucaaagugaagaaauucaaccaagcgcggguaaacggcggg
aguaacuaugacucucuuaagguagccaaaugccucgucaucuaauuagu
gacgcgcaugaauggauuaacgagauucccacugucccuaucuacuaucu
agcgaaaccacagccaagggaacgggcuuggcagaaucagcggggaaaga
agacccuguugagcuugacucuaguuugacauugugaagagacauagagg
guaguggaaauuaccucuauguuucuuuacuuauucaaugaagcggagcu
ggaauucauuuuccacguucuagcauucaaggucccauucggggcugauc
cggguugaagacauugucagguggggaguuuggcuggggcggcacaucug
uuaaacgauaacgcagauguccuaaggggggcucauggagaacagaaauc
uccaguagaacaaaaggguaaaagcccccuugauuuugauuuucagugug
aauacaaaccaugaaaguguggccuaucgauccuuuagucccucggaauu
ugaggcuagaggugccagaaaaguuaccacagggauaacuggcuuguggc
agucaagcguucauagcgacauugcuuuuugauucuucgaugucggcucu
uccuaucauaccgaagcagaauucgguaagcguuggauuguucacccacu
aauagggaacgugagcuggguuuagaccgucgugagacagguuaguuuua
cccuacugaugaauguuaccgcaauaguaauugaacuuaguacgagagga
acaguucauucggauaauugguuuuugcggcugucugaucaggcauugcc
gcgaagcuaccauccgcuggauuauggcugaacgccucuaagucagaauc
caugcuagaacgcggugauuucuuugcuccacacaauauagauggauacg
aauaaggcguccuuguggcgucgcugaaccauagcaggcuagcaacggug
cacuuggcggaaaggccuugggugcuugcuggcgaauugcaaugucauuu
ugcguggggauaaaucauuuguauacgacuuagauguacaacgggguauu
guaagcaguagaguagccuugguuacgaucugcugagauuaagccuuugu
ugucugauuugu
........................<<<<<<.....<......>......>
>>>>.>...{.....<<....>>...<<<<......<<.....>>.....
>>>>...[[[...........<<.<<<<<<...>>>>>>.>>........
.....<<<<<<<.<<<<<<<<<<<<<<<<<<<<.....<<<<......>>
>>.(.......<<<......)>>>....>>>>>>>>..>>>>>>>>....
>>>>>>>>>>>........<<<<<<<........>>>>>>>.....((((
(..<<<<<<)))))..]]]....}..........................
...<<....>>...............<<<<....>>>>............
......................<<<<<.<<<<<.......<<<<<<<<<<
<<<<<<<<<<<<<.....<<<<<<<<<....<.<<<<<<....>>>>>>>
......>>>>>>>.>.>.>>>>>.>>>>>>>>>>........<<<....>
>>....>>>>>>>>...>>>>>.>>>>>..<<<<........>>>><<<<
<<...<<<<<<<.<<<<<<..<<<...<<<<.....>>>>...>>>...<
<....>>.......<<<<<..<<<<<....>>>>>...>>>>>.<<<<<<
<<...<......>...>>>.>>>.>>....>>>>>>.>>>>>>>.<<.<.
.<<<<<<<.....<<<<<<<<<..<<<....<<<<<<<....>>>>>>>.
....>>>...<<<..<<.<<........>>>>.>>>....>>>>>>>>>.
..<<.......>>......>>>>>>...>..>.>>..<<<<<<....<.<
<<....>>>.><<<<<<<<<<...<<<.<<<<<<<.....<<<....<<<
....<<<.................>>>....>>>..>.>>.....>>>>>
...<<<<.<<<<.<......>>>>>.>>>>.....>>>>>.>>>>>>>>.
>>..<<<<.<<<<<.....>>>>>.>>>>....<<<......>>>...<<
<<<<<..<<<<(((.....<<<<<<.....<<..........<<<.<<<<
<<<<<<.......<<<<<.<<....<<.........>>....>>......
...<<......>>...>>>>>...>>>>>>>>>>>>>..........)))
.>>...>>>>>>.>>>>..>>>>>>><<<<<<<<<.........>>>>>>
>>>....>>>>>><.<<<<<<<..<<......<<<<.<<<<....>>>>>
>>>...>>.>>>>>>>..>.....>>>>>><<.....<<.....<<<<<<
.......>>>>>><<<<.....<<<<<.<<...<<<<<<...<<.....>
>.>>>>>>....((<<<<<<...<<....<<<....>>>...........
.....................>>....>>...<<<<<........>>>>>
))<<<<..<<<<<<.....<<<....>>>.......<<<<<<...<<<<.
<<<<<<<.<<<<<<<<<<..{{{..>>>>>><...<<<<<....<<<<<<
....<<<.....>>>....>>>>>>.....>>>>>....><<<<<<<<..
..>>>>>>>>>>>>...>>>>>>>.>>>>.........>>>>>>......
....>>>..>>>.>>>>>>>>..>>.....<<......>>>>>>>.<<<<
.....>>>>..>>>>..<<<<.....<<<<<<<.<<..............
.<<<<<....<....>.....>>>>><<.<<<<<<<<<<....>>>>..>
>>>>>.>>............<<<<<<<<<..<<<.........>>>..<<
<<<<<....<<<<.....>>>>......>>>>>>>...<<..<<<..<<<
<<<....<<<....<<<<<....>>>>.>...>>>.>>>>..>>>>><<<
<<<.......>>>>>>........<...........<<<<<.......>>
>>>.....>.....>>....>>.>>>>>>>.....>>.>>>>>>>..>>>
>>>....>>....<<<<<........>>>>>....[[[[[..{{{.{{..
....[[[[.{{.[[[..<<<<<.<<<<<<<<..<<<<<<<<<<<<<<<<.
..............>>>>>>>>>>>>>>>>...<<<<<.....<<<<..<
<<<........>>>>...............<<<<<<....>>>>>>..>>
>>..>>>>>.....>>>>>>>>..>>>>>...<<<.....>>>..<<<<<
<...........>>>>>>..<<...<<<<<<<...<<<<<<.......>>
>>>>.....<<...(((>>....>>>>>>>...<<<.<<<<<.......>
>>>.>>>>.<<<....>>>.>>))).......((((((..((((.>>>>>
>))))))))))..........]]]...}}]]]].......<<.<.<.<<<
<<<...<<.......>>...>>>>>>...>>.>.>.......<<<<<.<<
<<<<..<.<<<<<<<......>>>>>>>...>.<<<.........>>>..
...>>>>>..>...>>>.>>....<<<<<<<....>>>.>>>>....}}.
.}}}.]]]]]....<<<<<<<<..<<<<.<.<<<<<<.............
..>>>>>>.><<<<<...<<<<....<<<<<<<<<<}}}.>>>>>..>>>
>>...>>>>..>>>>>.<<<<...<<<<<...........>>>>>...>>
>>.>>>>....>>>>>>>>.......<<<<<<.<<<.<<....<<.....
.....<<<<<<.....>>>>>>......>>.......<<<<<<...<<<<
<.<..<<<......>>>..>.>>>>>.>>>>>>.............>>.>
>>.>>>>>>..<<<<<.<.............>.....<<<<<<<<<.<<<
....<<<<....<<<<<....>>>>>...>>>>...>>>....>>>>.>>
>>>..>>>>>..
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7osm Accuracy mechanism of eukaryotic ribosome translocation.
Resolution3.0 Å
Binding residue
(original residue number in PDB)		K11 K12 T14 K15 F17 R19 H20 H21 D23 R24 H26 R27 N31 W32 R33 K34 K36 G37 I38 D39 S40 R43 R44 R45 F46 R47 G48 N49 P53 K54 I55 G56 Y57 G58 S59 N60 K61 K62 F65 L66 L75 N78 I96 A97 H98 N99 I100 S101 A102 K103 G124 R125 L128
Binding residue
(residue number reindexed from 1)		K10 K11 T13 K14 F16 R18 H19 H20 D22 R23 H25 R26 N30 W31 R32 K33 K35 G36 I37 D38 S39 R42 R43 R44 F45 R46 G47 N48 P52 K53 I54 G55 Y56 G57 S58 N59 K60 K61 F64 L65 L74 N77 I95 A96 H97 N98 I99 S100 A101 K102 G123 R124 L127
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sun Dec 1 09:46:41 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '7osm', asym_id = 'eL32', bs = 'BS01', title = 'Accuracy mechanism of eukaryotic ribosome translocation.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='7osm', asym_id='eL32', bs='BS01', title='Accuracy mechanism of eukaryotic ribosome translocation.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003735,0005840,0006412', uniprot = '', pdbid = '7osm', asym_id = 'eL32'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412', uniprot='', pdbid='7osm', asym_id='eL32')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>