Structure of PDB 8fbb Chain e Binding Site BS01

Receptor Information
>8fbb Chain e (length=56) Species: 1083 (Magnetospirillum molischianum) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SNPKDDYKIWLVINPSTWLPVIWIVALLTAIAVHSFVLSVPGYNFLASAA
AKTAAK
Ligand information
Ligand IDLYC
InChIInChI=1S/C40H56/c1-33(2)19-13-23-37(7)27-17-31-39(9)29-15-25-35(5)21-11-12-22-36(6)26-16-30-40(10)32-18-28-38(8)24-14-20-34(3)4/h11-12,15-22,25-32H,13-14,23-24H2,1-10H3/b12-11+,25-15+,26-16+,31-17+,32-18+,35-21+,36-22+,37-27+,38-28+,39-29+,40-30+
InChIKeyOAIJSZIZWZSQBC-GYZMGTAESA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0CC(=CCC/C(=C/C=C/C(=C/C=C/C(=C/C=C/C=C(\C)/C=C/C=C(\C)/C=C/C=C(\C)/CCC=C(C)C)/C)/C)/C)C
CACTVS 3.341CC(C)=CCCC(C)=CC=CC(C)=CC=CC(C)=CC=CC=C(C)C=CC=C(C)C=CC=C(C)CCC=C(C)C
OpenEye OEToolkits 1.5.0CC(=CCCC(=CC=CC(=CC=CC(=CC=CC=C(C)C=CC=C(C)C=CC=C(C)CCC=C(C)C)C)C)C)C
CACTVS 3.341CC(C)=CCC\C(C)=C\C=C\C(C)=C\C=C\C(C)=C\C=C\C=C(C)\C=C\C=C(C)\C=C\C=C(/C)CCC=C(C)C
ACDLabs 10.04C(\C=C\C=C(\CC/C=C(\C)C)C)(=C/C=C/C(=C/C=C/C=C(/C=C/C=C(/C=C/C=C(\C)CC\C=C(/C)C)C)C)C)C
FormulaC40 H56
NameLYCOPENE
ChEMBLCHEMBL501174
DrugBankDB11231
ZINCZINC000008214943
PDB chain8fbb Chain e Residue 101 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB8fbb Elucidating interprotein energy transfer dynamics within the antenna network from purple bacteria.
Resolution11.3 Å
Binding residue
(original residue number in PDB)		A30 H34
Binding residue
(residue number reindexed from 1)		A30 H34
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0042314 bacteriochlorophyll binding
GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
GO:0046872 metal ion binding
Biological Process
GO:0019684 photosynthesis, light reaction
Cellular Component
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0030076 light-harvesting complex
GO:0030077 plasma membrane light-harvesting complex

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Molecular Function
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Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8fbb, PDBe:8fbb, PDBj:8fbb
PDBsum8fbb
PubMed37399405
UniProtQ7M119

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