Structure of PDB 6ypu Chain e Binding Site BS01

Receptor Information
>6ypu Chain e (length=207) Species: 575584 (Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ARYIGPKCKLSRREGTDLQLKSGVKPFDVKTKKANKAPGQHGQARGGKQS
EYSLQLREKQKVRRIYGVLERQFSNYYKEAARVKGATGENLLKLLESRLD
NVVYRMGFGSTRAEARQLVSHRSITLNGRRVNIASIQVKAGDVIAVHEGA
KQQLRIKNAIELAAQRGIPAWIEVDHSKLEGTFKAAPDRSDLPAEINESL
IVELYSK
Ligand information
>6ypu Chain 2 (length=894) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uaacugaagaguuugaucauggcucagauugaacgcuggcggcaggcuua
acacaugcaagucgagcgggggaagcggaccuagcggcggacgggugagu
aaugcuuaggaaucugccuauuagugggggacaacaucucgaaagggaug
cuaauaccgcauacguccuacgggagaaagcagggccuugcgcuaauaga
ugagccuaagucggauuagcuaguuggugggguaaaggccuaccaaggcg
acgaucuguagcgggucugagaggaugauccgccacacugggacugagac
acggcccagacuccuacgggaggcagcaguggggaauauuggacaauggg
gggaacccugauccagccaugccgcgugugugaagaaggccuuaugguug
uaaagcacuuuaagcgaggaggaggcuacuuuaguuaauaccuagagaua
guggacguuacucgcagaauaagcaccggcuaacucugugccagcagccg
cgguaauacagagggugcgagcguuaaucggauuuacugggcguaaagcg
ugcguaggcggcuuauuaagucggaugugaaauccccgagcuuaacuugg
gaauugcauucgauacuggugagcuagaguaugggagaggaugguagaau
uccagguguagcggugaaaugcguagagaucuggaggaauaccgauggcg
aaggcagccaucuggccuaauacugacgcugagguacgaaagcaugggga
gcaaacaggauuagauacccugguaguccaugccguaaacgaugucuacu
agccguuggggccggcuuuaguggcgcagcuaacgcgauaaguagaccgc
cuggggaguacggucgcaagacuaaaacucaaaugaauugacgg
........<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<....
.<<<.<<<..<<<..<<.<<<........>>>.>>>>>......<<....
...<<<<<<<..<<...<<<<<<<<<.<<.....<<<<<......>>>>>
......>>.>.....<<<....>>>....<<<<<..>>>>>>>>>>>>>.
.>>.>>>>>>><<<....<<<..<<<<<<<<.......>>>>>>>>>>>.
.....>>>..<<<<<<<<....>>>>...>>>>.>>.<<<<<.<......
...>>>>>>.<<<<....>>>>...>>>>>>.........<<<...<<<<
<....>>>>.>>>>..>>.>>>>>>..<<<<......<<<<....>>>>.
....>>>>.....<<<<<......<<<<<<<<<<.......>>>>>>.>>
>>........>>>>>.......<<<<<(((...<<<<<.....<<.)))>
>.......>>>>>>>>>>..>>>>>>>>>..........<<<((.....<
<<<...<<<.<<<<<<<.<<<<<<<<<<......<<<<<<.....>>>>>
>....>>>>>>>>..>>>>>>>>>...<<<<<<<<...<<<<<<<....<
<<<<<<<...<<<......>>>......>>>>>>>>...........<<.
...>>.>>>>>>>..>>>.>>>>>...>>>...>>>>....<<<<<<...
<<...<<<<.<.....>.>>>>...>>>>>>>>..........<<<<<<.
.<<<<<<<<<<<<>>>>>>>>>>>>...<<..))>>.....>>>>>>.>>
>.<<<......<<<<....>>>>....>>>..)))).]......
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6ypu Structure of the 70S Ribosome from the Human Pathogen Acinetobacter baumannii in Complex with Clinically Relevant Antibiotics.
Resolution2.9 Å
Binding residue
(original residue number in PDB)
A2 R3 P7 K8 C9 K10 R13 R14 K22 S23 K31 T32 K33 K34 K37 G40 Q41 H42 Y53 R58 Q61 E71 R72 R83 K85 T112 A114 E115 Q118 S121 H122 R123 R130 V132 N133 S136 Q154 R156 E204 K208
Binding residue
(residue number reindexed from 1)
A1 R2 P6 K7 C8 K9 R12 R13 K21 S22 K30 T31 K32 K33 K36 G39 Q40 H41 Y52 R57 Q60 E70 R71 R82 K84 T111 A113 E114 Q117 S120 H121 R122 R129 V131 N132 S135 Q153 R155 E203 K207
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
GO:0042274 ribosomal small subunit biogenesis
Cellular Component
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:6ypu, PDBe:6ypu, PDBj:6ypu
PDBsum6ypu
PubMed32857965
UniProtD0CD21

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