Structure of PDB 8uu5 Chain d Binding Site BS01

Receptor Information

>8uu5 Chain d (length=199) Species: 1642 (Listeria innocua)

ARYTGPSWKVSRRLGISLSGTGKELERRPYAPGQHGPTQRKKISEYGLQQ
AEKQKLRHMYGLTERQFKNTFNKAGKLQGKHGENFMILLEQRLDNIVYRL
GLARTRRAARQLVNHGHITVDGKRVDIPSYQVSVGQVISVREKSAKNSAI
AESLEVSSFVPEYVTFDAETLTGSLNRLPERSELAAEINEAFIVEFYSR

Ligand information

>8uu5 Chain a (length=1523)

aaagagaguuugauccuggcucaggacgaacgcuggcggcgugccuaaua
caugcaagucgaacgaacggagguccaaaguuaguggcggacgggugagu
aacacgugggcaaccugccuguaaguuggggauaacuccgggaaaccggg
gcuaauaccgaaugauagaguguggcgcaugccacgcucuugaaagaugg
uuucggcuaucgcuuacagaugggcccgcggugcauuagcuaguugguag
gguaauggccuaccaaggcaacgaugcauagccgaccugagagggugauc
ggccacacugggacugagacacggcccagacuccuacgggaggcagcagu
agggaaucuuccgcaauggacgaaagucugacggagcaacgccgcgugua
ugaagaagguuuucggaucguaaaguacuguuguuagagaagaacaagga
uaagaguaacugcuugucccuugacgguaucuaaccagaaagccacggcu
aacuacgugccagcagccgcgguaauacguagguggcaagcguuguccgg
auuuauugggcguaaagcgcgcgcaggcggucuuuuaagucugaugugaa
agcccccggcuuaaccggggagggucauuggaaacuggaagacuggagug
cagaagaggagaguggaauuccacguguagcggugaaaugcguagauaug
uggaggaacaccaguggcgaaggcgacucucuggucuguaacugacgcug
aggcgcgaaagcguggggagcaaacaggauuagauacccugguaguccac
gccguaaacgaugagugcuaaguguuaggggguuuccgccccuuagugcu
gcagcuaacgcauuaagcacuccgccuggggaguacgaccgcaagguuga
aacucaaaggaauugacgggggcccgcacaagcgguggagcaugugguuu
aauucgaagcaacgcgaagaaccuuaccaggucuugacauccuuugacca
cucuggagacagagcuuucccgggacaaagugacagguggugcaugguug
ucgucagcucgugucgugagauguuggguuaagucccgcaacgagcgcaa
cccuugauuuuaguugccagcauuuaguugggcacucuaaagugacugcc
ggugcaagccggaggaagguggggaugacgucaaaucaucaugccccuua
ugaccugggcuacacacgugcuacaauggaugguacaaagggucgcgaag
ccgcgagguggagccaaucccauaaaaccauucucaguucggauuguagg
cugcaacucgccuacaugaagccggaaucgcuaguaaucguggaucagca
ugccacggugaauacguucccgggccuuguacacaccgcccgucacacca
cgagaguuuguaacacccgaagucgguaggguaaccggagccagccgccg
aaggugggacagauaauuggggugaagucguaacaagguagccguaucgg
aaggugcggcuggaucaccuccu

.....<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<.....<<
<.<<<..<<<..<<..<<...<...>...>>..>>>>>......<<....
....<<<<<<<..<<...<<<<<<<<<.<<.....<<<<<<....>>>>>
>......>>.>.....<<<<<<<<<<....>>>>>>>>>>.....<<<<<
<....>>>>>>>>>>>>>>..>>>>>>>>>.<<<....<<<..<<<<<<<
<.......>>>>>>>>>>>......>>>..<<<<<<<<....>>>>...>
>>>.>>.<<<<<.<.........>>>>>>.<<<<<..>>>>>...>>>>>
>.........<<<....<<<<....>>>>..>>>..>>.>>>>>>..<<<
<......<<<<....>>>>.....>>>>...<<<<<<<.......<.<<<
<<<<........>>>>>>>.>........>>>>>>...>..<<<<<(((.
..<<<<<.....<<.)))>>.......>>>>>>>>>>..>>>>>>>>>..
........<<<((.....<<<<...<<<.<<<<<<<.<<<<<<<<<....
...<<<<<<.....>>>>>>.....>>>>>>>..>>>>>>>>>...<<<<
<<<<...<<<<<<<....<<<<<<<<<..<<<......>>>.....>>>>
>>>>>...........<<....>>.>>>>>>>..>>>>>.>>>...>>>.
..>>>>....<<<<<<...<<...<<<<.<.....>.>>>>...>>>>>>
>>..........<<<<<<..<<<<<<<<<<<<<....>>>>>>>>>>>>>
...<<..))>>.....>>>>>>.>>>.<<<......<<<<....>>>>..
..>>>..)))).]<<<<<.<<<<<<<.<<.<<<<<<..<<<<<<<<<<..
....<<........>>..........<<<<<<<......<<<<<<.....
<<<<<....>>>>>....<<<>>>..>>>>.>>.<<<.<<<..<<<<<<.
......<<<<<<<<<....>>>..<<<<......>>>>..>>>>>>....
.<<<<.<<<<<<<..<<<..<<......>>>>>...>>>>>>>.....<<
<<<....>>>>>........>>>>.........>>>...>>>>>>>>>..
.>>>>>>>...>>.>>>>>>>>.....<<<<<<<.....<<<..<<...<
<<....>>>...>>....>>>.....>>>>>>>......<....<<<<<<
<........>>>>>>>....>.....>>>>>>....<<<<<<<.......
..>>>>>>>......>>...>>>>>>>>>>.>>....<..<<.<.<<<<.
<<<..<<<<<<..<<<<....<.<<<<..<<<..<<>>.>>>.>>>>.>.
..>>>>..>>>>>>..>>>.>>>>..>.>>...>.....<<<<<<<<<..
..>>>>>>>>>............

Receptor-Ligand Complex Structure

Structure summary

• PDB: 8uu5 Mechanistic insights into the alternative ribosome recycling by HflXr.
• Resolution: 3.0 Å
• Binding residue (original residue number in PDB): A2 T5 P7 S8 W9 K10 R13 R14 R29 G34 H36 Q55 R58 T64 E65 R66 Q67 K77 R105 T106 R108 R111 Q112 N115 H116 H118 V126 S130 Y131 E196 R200
• Binding residue (residue number reindexed from 1): A1 T4 P6 S7 W8 K9 R12 R13 R28 G33 H35 Q54 R57 T63 E64 R65 Q66 K76 R104 T105 R107 R110 Q111 N114 H115 H117 V125 S129 Y130 E195 R199

Gene Ontology

--> -->

UnboundLocalError

Python 3.6.8: /usr/bin/python3 Fri Nov 15 23:22:29 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1435     title=pdb2title(pdbid)

   1436     if bs.startswith("BS"):

=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

   1438     else:

   1439         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '8uu5', asym_id = 'd', bs = 'BS01', title = 'Mechanistic insights into the alternative ribosome recycling by HflXr.'

 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='8uu5', asym_id='d', bs='BS01', title='Mechanistic insights into the alternative ribosome recycling by HflXr.')

   1295         display_ec(ec,csaOrig,csaRenu)

   1296     if go:

=> 1297         display_go(go,uniprot,pdbid,asym_id)

   1298     return pubmed,uniprot

   1299 

global display_go = <function display_go>, go = '0003723,0003735,0006412,0015935,0019843', uniprot = '', pdbid = '8uu5', asym_id = 'd'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003723,0003735,0006412,0015935,0019843', uniprot='', pdbid='8uu5', asym_id='d')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>