Structure of PDB 8oeq Chain d Binding Site BS01

Receptor Information
>8oeq Chain d (length=81) Species: 5476 (Candida albicans) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VLVQDLLHPSPATEAKQHKLKTLVQQPRSFFMDVKCQGCLNITTVFSHAQ
TAVTCDSCSTVLCTPTGGKAKLTEGCSFRRK
Ligand information
>8oeq Chain B (length=1712) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uaucugguugauccugccaguagucauaugcuugucucaaagauuaagcc
augcaugucuaaguauaagcaauuuauacagugaaacugcgaauggcuca
uuaaaucaguuaucguuuauuugauaguacuacuuggauaaccgugguaa
uucuagagcuaauacaugcuuaaaaucccgacuguuuggaagggauguau
uuauuagauaaaaaaucaaugccuucgggcucuuugaugauucauaauaa
cuuuucgaaucgcauggccuugugcuggcgaugguucauucaaauuucug
cccuaucaacuuucgaugguaggauaguggccuaccaugguuucaacggg
uaacggggaauaaggguucgauuccggagagggagccugagaaacggcua
ccacauccaaggaaggcagcaggcgcgcaaauuacccaaucccgacacgg
ggagguagugacaauaaauaacgauacaggguuguaauuggaaugaguac
aauguaaauaccuuaacgaggaacaauuggagggcaagucuggugccagc
agccgcgguaauuccagcuccaaaagcguauauuaaaguuguugcaguua
aaaagcucguaguugaaccuugggcuuggcuggccgguccuggacccagc
cgagccuuuccuucuggccaggacuuuuacuuugaaaaaauuagaguguu
caaagcaggccuuugcucgaauauauuagcauggaauaauagaauaggac
guuaugguucuauuuuguugguuucuaggaccaucguaaugauuaauagg
gacggucggggguaucaguauucaguugucagaggugaaauucuuggauu
uacugaagacuaacuacugcgaaagcauuuaccaaggacguuuucauuaa
ucaagaacgaaaguuaggggaucgaagaugaucagauaccgucguagucu
uaaccauaaacuaugccgacuagggaucgguuguuguucuuuuauugacg
caaucggcaccuuacgagaaaucaaagucuuuggguucuggggggaguau
ggucgcaaggcugaaacuuaaaggaauugacggaagggcaccaccaggag
uggagccugcggcuuaauuugacucaacacggggaaacucaccaggucca
gacacaauaaggauugacagauugagagcucuuucuugauuuugugggug
guggugcauggccguucuuaguugguggagugauuugucugcuuaauugc
gauaacgaacgagaccuuaaccuacuaaauagugcugcuagcauuugcug
guauagucacuucuuagagggacuaucgauuucaagucgauggaaguuug
aggcaauaacaggucugugaugcccuuagacguucugggccgcacgcgcg
cuacacugacggagccagcgaguauaagccuuggccgagaggucugggaa
aucuugugaaacuccgucgugcuggggauagagcauuguaauuguugcuc
uucaacgaggaauuccuaguaagcgcaagucaucagcuugcguugauuac
gucccugcccuuuguacacaccgcccgucgcuacuaccgauugaauggcu
uagugaggccuccggauugguuuagggaaccgagaagcuggucaaacuug
gucauuuagaggaaguaaaagucguaacaagguuuccguaggugaaccug
cggaaggaucau
...<<<<<.{.[[[[>>>>><<<<.<<<<<<...<.<...<......<<<
.<<<..<<....<<....<<..........>>...>>.>>......<<..
......<<<..<<..<<....<<<..........<<.....<..<<....
...>>..>......>>........<<<<<..<<....>>..>>>>><...
<<<<<<.......((((((.<<<....>>>..............>>>>>>
.....>...<<<<..<<<.....>>>.>>>>....>>>...>>>>..>>>
.<<<....<<<....<<<<<<<<.......>>>>>>>>>>>......>>>
...<<<.<<<<....>>>>....>>>.>>.<<.<<<..........>>>.
>>.<.<<....>>.>...>>>>>>.........<<<....<<<<...>>>
>..>>>..>....>.>.....<<<<...<...>...>>>>......<<..
<...........>..>>.........<<<<<((......<<<<.....<<
..))>>.......>>>>.>>>>>..>>>>>>>>>>.........<<<[[.
....<.<<...<<<.<<....<<<<<<<<<<<<............>>>>>
>>>>>>>....<<<<<..>>>>>...<<<<<.<<.......<<...<...
....>..<<<....>>>....>>......>>.>>..>>>.........<<
<..<<<<<<<<......))))))...>>>>>>>>>>>.....>>....<<
<<<<.<<...<<<<..<<..<<<<<<.<...<<<......>>>......>
.>>>>>>..>>.......<<....>>...>>>>...>>>>>.>>>...>>
>...>>.>....<<<<<<<...<...<<<<.<.....>.>>>>...>>>>
>>>>..........<<<.<<.<<<..<<<<<<<<..<<........>>.>
>>>>>>>..>>>...<<..]]>>...>>.....>>>.>>>.<<<......
<<<<....>>>>....>>>..]]]].}<<<<<.<<<<<<<..<<.<<<<<
<..<<<.<<<<<<......<<........>>..........<<<<<....
..<<<<<........<<.<<<........>>>.>>......>>>>>...<
<.<<<..<<.<<<<<.....<<<.<<<<<....>>>...<<<......>>
>...>>.>>>....<<<<<.<<..<<<<..<<<<.<<<<<<<....>>>>
>>>....>>>>..>>>>.>>....<<<<<<.....>>>>>>.......>>
>>>.....>>.>>>.....>>>>>>>.......>>>>>...>>.>>>>.>
>>.....<<<<<<<......<<......<<<.<<<<....>>>>.>>>..
..>>.......>>>>>>>...........<<<<<<..........>>>>>
>..........>>>>>>....<<<<<<<<.......>>>>>>>>......
>>...>>>>>>>>>>.>>....<..<<.<..<<<<.<<....<<<<<<<<
.<<<..<<<<..<...<<<<.........>>>>...>..>>>>..>>>.>
>>>>>>>...>>.>>>>...>.>>...>.....<<<<<<<<<<..>>>>>
>>>>>.......
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB8oeq Drug-induced rotational movement of the ribosome is a key factor for read-through enhancement
Resolution3.3 Å
Binding residue
(original residue number in PDB)
K17 H19 K20 L21 K22 P28 S30 F47 H49 Q51 P66 T67 G68 G69 K70 E75
Binding residue
(residue number reindexed from 1)
K16 H18 K19 L20 K21 P27 S29 F46 H48 Q50 P65 T66 G67 G68 K69 E74
External links