Structure of PDB 8k22 Chain d Binding Site BS01
Receptor Information
>8k22 Chain d (length=295) Species:
979527
(Vibrio phage ICP1_2004_A) [
Search protein sequence
] [
Download receptor structure
] [
Download structure with residue number starting from 1
] [
View receptor structure
]
MQKQILTSQKRNMYILSRCKVLVKNGQVCHLHEDGNVYTVPYANTVFIGL
AEGTSITNEAMSMLAANGVIVFWTKGGGYDMFAADIICHLPQADYRPTKY
MQNWVRLWLDEEKKLSAAKEILKMRVDSLSTHVHDFGVDVENKRVSSIVN
KFDKGVTQATSFESLLGHEGTFVKSLYKEYALEYEIEFKRDHKSADNYNK
FLTLGNYYAYGIARSSLWALGIDNSFPLLHGSTRRGGLVFDVADIIKTSI
ILPLAFHAADQGMSNTEFKRSCVAYFDKNDILAYLINNIKRLCME
Ligand information
>8k22 Chain U (length=21) [
Search DNA sequence
] [
Download ligand structure
] [
Download structure with residue number starting from 1
] [
View ligand structure
]
agcaatttaaatagggaagat
Receptor-Ligand Complex Structure
Global view
Local view
Structure summary
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
PDB
8k22
Structure of csy complex with long DNA State2
Resolution
2.92 Å
Binding residue
(original residue number in PDB)
L22 V23 K24 N25 G26 T57 E59
Binding residue
(residue number reindexed from 1)
L22 V23 K24 N25 G26 T57 E59
Gene Ontology
Molecular Function
GO:0003677
DNA binding
GO:0004519
endonuclease activity
GO:0046872
metal ion binding
Biological Process
GO:0051607
defense response to virus
View graph for
Molecular Function
View graph for
Biological Process
External links
PDB
RCSB:8k22
,
PDBe:8k22
,
PDBj:8k22
PDBsum
8k22
PubMed
UniProt
F1D5W0
[
Back to BioLiP
]