Structure of PDB 8k21 Chain d Binding Site BS01

Receptor Information

>8k21 Chain d (length=295) Species: 979527 (Vibrio phage ICP1_2004_A) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

MQKQILTSQKRNMYILSRCKVLVKNGQVCHLHEDGNVYTVPYANTVFIGL
AEGTSITNEAMSMLAANGVIVFWTKGGGYDMFAADIICHLPQADYRPTKY
MQNWVRLWLDEEKKLSAAKEILKMRVDSLSTHVHDFGVDVENKRVSSIVN
KFDKGVTQATSFESLLGHEGTFVKSLYKEYALEYEIEFKRDHKSADNYNK
FLTLGNYYAYGIARSSLWALGIDNSFPLLHGSTRRGGLVFDVADIIKTSI
ILPLAFHAADQGMSNTEFKRSCVAYFDKNDILAYLINNIKRLCME

Ligand information

>8k21 Chain U (length=21) [Search DNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

agcaatttaaatagggaagat

Receptor-Ligand Complex Structure

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Structure summary

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PDB	8k21 Structure of csy complex with short DNA
Resolution	3.8 Å
Binding residue (original residue number in PDB)	L22 V23 N25 G26 T57 E59
Binding residue (residue number reindexed from 1)	L22 V23 N25 G26 T57 E59

Gene Ontology

	Molecular Function
GO:0003677	DNA binding
GO:0004519	endonuclease activity
GO:0046872	metal ion binding

	Biological Process
GO:0051607	defense response to virus

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Molecular Function

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Biological Process

External links

PDB	RCSB:8k21, PDBe:8k21, PDBj:8k21
PDBsum	8k21
PubMed
UniProt	F1D5W0

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