Structure of PDB 7s9u Chain d Binding Site BS01

Receptor Information

>7s9u Chain d (length=44) Species: 1423 (Bacillus subtilis)

MKRTFQPNNRKRSKVHGFRSRMSSKNGRLVLARRRRKGRKVLSA

Ligand information

>7s9u Chain A (length=2436)

uuaaguuagaaagggcgcacgguggaugccuuggcacuaggagccgauga
aggacgggacgaacaccgauaugcuucggggagcuguaagcaagcuuuga
uccggagauuuccgaauggggaaacccaccacucguaauggagugguauc
cauaucugaauucauaggauaugagaaggcagacccggggaacugaaaca
ucuaaguacccggaggaagagaaagcaaaugcgauucccugaguagcggc
gagcgaaacgggaucagcccaaaccaagaggcuugccucuugggguugua
ggacacucuguacggaguuacaaaggaacgagguagaugaagaggucugg
aaaggcccgccauaggagguaacagcccuguagucaaaacuucguucucu
ccugaguggauccugaguacggcggaacacgugaaauuccgucggaaucc
gggaggaccaucucccaaggcuaaauacucccuagugaccgauagugaac
caguaccgugagggaaaggugaaaagcaccccggaaggggagugaaagag
auccugaaaccgugugccuacaaguagucagagcccguuaacgggugaug
gcgugccuuuuguagaaugaaccggcgaguuacgaucucgugcaagguua
agcagaagaugcggagccgcagcgaaagcgagucugaauagggcgcauga
guacguggucguagacccgaaaccaggugaucuacccauguccaggguga
aguucagguaacacugaauggaggcccgaacccacgcacguugaaaagug
cggggaugagguguggguaggggugaaaugccaaucgaaccuggagauag
cugguucucuccgaaauagcuuuagggcuagccucaagguaagagucuug
gagguagagcacugauuggacuaggcgaauucagucaaacuccgaaugcc
aaugacuuauccuugggagucagacugcgagugauaagauccguagucga
aagggaaacagcccagaccgccagcuaaggucccaaaguauacguuaagu
ggaaaaggauguggaguugacucugcgccgaaaauguaccggggcuaaac
guaucaccgaagcugcggacuguucuucgaacagugguaggagagcguuc
uaagggcugugaagccagaccggaaggacugguggagcgcuuagaaguga
gaaugccgguaugaguagcgaaagaggggugagaauccccuccaccgaau
gccuaagguuuccugaggaaggcucguccgcucaggguuagucgggaccu
aagccgaggccgaaaggcguaggcgauggacaacagguugauauuccugu
accaccuccucaccauuugagcaauggggggacgcaggaggauaggguaa
gcgcgguauuggauauccgcguccaagcaguuaggcugggaaauaggcaa
auccguuucccauaagccugagcugugauggcgagcgaaauauaguagcg
aaguuccugauuccacacugccaagaaaagccucuagcgaggugagaggu
gcccguaccgcaaaccgacacagguaggcgaggagagaauccuaagguga
ucgagagaacucucguuaaggaacucggcaaaaugaccccguaacuucgg
gagaaggggugcucuguuagggugcaagcccgagagagccgcagugaaua
ggcccaggcgacuguuuagcaaaaacacaggucucugcgaagccguaagg
cgaaguauaggggcugacgccuaggcgcaacgaucugggcacugucucaa
cgagagacucggugaaauuauaguaccugugaagaugcagguuacccgcg
acaggacggaaagaccccguggagcuuuacugcagccugauauugaaugu
ccuucuaacccgccgcccuuaucgggcggggagacagugucaggugggca
guuugacuggggcggucgccuccuaaaagguaacggaggcgcccaaaggu
ucccucagaaugguuggaaaucauucgcagaguguaaaggcacaagggag
cuugacugcgagaccuacaagucgagcagggacgaaagucgggcuuagug
auccggugguuccgcauggaagggccaucgcucaacggauaaaagcuacc
ccgguccgucgcgggcgcaggaaauuugagaggagcuguccuuaguacga
gaggaccgggauggacgcaccgcugguguaccaguuguucugccaagggc
aucgcuggguagcuaugugcggacgggauaagugcugaaagcaucuaagc
augaagccccccucaagaugagauuucccauuccgcaaggaaguaagauc
ccugaaagaugaucagguugauaggucugagguggaaguguggcgacaca
uggagcugacagauacuaaucgaucgaggacuuaac

<<<<<<......<<<<<<<<<<<....<<<..<<<<<<<<<<<<<.....
.<<<<<<.....((.>>>.....<<<<<<<..<<<)).....>>>.....
>>>>>>>...>>>....<<<....>>><<<<<<<......>>>>>>>.<<
<<<<<<<.........>>>>>>>.>>.>>....<<<<<<.....<.....
.>......>>>>>.>.........<<....>>...<<<<......<<...
..>>.....>>>>...<<<....<<<<<<<<....>>>>>>>>.......
<<<<<<<<.....<<<<.......<<<<<<<<<<.<<<.....<<<<...
...>>>>.((......<<<.....))>>>...>>>...>>>>>>>>>>>>
>>.>>>>>..>>>......<<<<<<<<.........>>>>>>>>......
<<<<<..((((>>>>>..>>>......>>.>>>>>>>.>>..........
.....<<....>>....>>.........<<<<....>>>>..........
...>....>>>>>>>>>>>.......<<<<..<<<<......>>>>..>>
>>...<.<........>.>.<<<<<<....<<<<<<<.<<<<<..<<<..
.<<<.....>>>...>>>...<<....>>..<<<<.....>>>>......
>>>>>.>>>>>>>..<<.<..<<<<<<<.....<<<<<<<<<..<<<...
.<<<<<<......>>>>>>.....>>>...<<<.<<<<<........>>>
>>>>>....>>>>>>>>>...<<<.....>>>......>>>>>>...>..
>.>>..<<<<<<....<<<<<....>>>>><<.<<<<<<...<<<<<<<<
<......<<...<<<.<<.............>>.>>>..>>.......>>
>>.>>>>>..>>>>>>..>>..<<<<<<<.<<......>>.>>>>>>>..
..<<<......>>>...<<<<.<<<...<<<(((.....<<<<<<.....
......<<..<<<<<<<..>>>>>>>.>>...........))).....>>
>>>>.>>>...>>>>>>><<<<<<<...>>>>>>>....>>>>>><.<<<
<<<<.<<......<<<<<.<<....>>.>>>>>...>>.>>>>>>>..>.
....>>>>>><......<<....<<<<<<.......>>>>>><<<<....
<<<<<.<<...<<<<<<...<<.....>>.>>>>>>....((<<<<.<<.
..<<<...<<<....>>>...>>>...>>...<<<<<........>>>>>
))<<<<<.<<<<<<......<<...<<<<....<<<<..<<<..<<<.<.
<<<.<.....[....>.>>>.<...<.....<<<<<.<<<<<<<.<<...
..>>>>>>>>>....>>>>>.....>....><..<<...........>>.
..>>.>>>...>>>...>>>>.........>>>>..>>..>>>>>>>>>>
>>>>>..>>.....<<......>>>>>>>.<<<<.....>>>>..>>>>.
.<<<<....<<<<<<<..<<<........<.....<<<<<....<<..>>
.....>>>>><<<<.....<<<<....>>>>....>>>>...........
.<<<<<<<<<..<<<.........>>>..<<<<<<<.....<<<....>>
>.......>>>>>>>..<<<<..>>>>...>>.>>>>>>>..>.>>>..>
>>>>>>.>>>>>>.....>.....<<<<<........>>>>>..<<<<<<
<<.<<<..............<<<<<<..<<<<<.<<<<<<<<<.<<....
...>>....<<.<<<<<.......>>>>>>>.....>>>>>>>>>..>>>
>>..<<<.......>>><<<<<<...........>>>>>>..<<.....<
<<<<....<<<<<.......>>>>>......<..[.(((.>....>>>>>
.....<<<<..<<<......>>>..>>>>.<<<....>>>.>>)))]...
...<<<<<<<.<<..))))..>>>>>>>>>.............>>>>..>
>...>>>>>>>>>>>....<<<<<<<...<<<<..<<<<<<<.....<..
..>....>>>>>>>.<<<<<...<<<<...<<<<<<<<<<<.]..>>>>>
>..>>>>>...>>>>.>>>>>...<<<.<..<<<<<...........>>>
>>...>>>>.>>>>.......>>>>>>>..<<<<....>>>>....<<<<
<<<<<.......>>>>>....<<<<<<<<.<<<....<<<<<....>>>>
>...>>>..>>>>>.>>>...>>>>....>>>>>>.

Receptor-Ligand Complex Structure

Structure summary

• PDB: 7s9u RbgA ensures the correct timing in the maturation of the 50S subunits functional sites.
• Resolution: 3.2 Å
• Binding residue (original residue number in PDB): M1 R3 T4 F5 Q6 N8 N9 R10 K11 R12 K14 H16 F18 R19 R21 K25 N26 R33 R34 R35 K37 R39 K40
• Binding residue (residue number reindexed from 1): M1 R3 T4 F5 Q6 N8 N9 R10 K11 R12 K14 H16 F18 R19 R21 K25 N26 R33 R34 R35 K37 R39 K40

Gene Ontology

Molecular Function

• GO:0003735 structural constituent of ribosome

Biological Process

• GO:0006412 translation

Cellular Component

• GO:0005840 ribosome
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:7s9u, PDBe:7s9u, PDBj:7s9u
• PDBsum: 7s9u
• PubMed: 35141754
• UniProt: P05647|RL34_BACSU Large ribosomal subunit protein bL34 (Gene Name=rpmH)