Structure of PDB 6zce Chain d Binding Site BS01

Receptor Information
>6zce Chain d (length=62) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PVTLAKVIKVLGRTGSRGGVTQVRVEFLEDTSRTIVRNVKGPVRENDILV
LMESEREARRLR
Ligand information
>6zce Chain A (length=1719) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uaucugguugauccugccaguagucauaugcuugucucaaagauuaagcc
augcaugucuaaguauaagcaauuuauacagugaaacugcgaauggcuca
uuaaaucaguuaucguuuauuugauaguuccuacaugguauaacuguggu
aauucuagagcuaauacaugcuuaaaaucucgacccuuuggaagagaugu
auuuauuagauaaaaaaucaagaugauucauaauaacuuuucgaaucgca
uggccuugugcuggcgaugguucauucaaauuucugcccuaucaacuuuc
gaugguaggauaguggccuaccaugguuucaacggguaacggggaauaag
gguucgauuccggagagggagccugagaaacggcuaccacauccaaggaa
ggcagcaggcgcgcaaauuacccaauccuaauucagggagguagugacaa
uaaauaacgauacagggcccauucgggucuuguaauuggaaugaguacaa
uguaaauaccuuaacgaggaacaauuggagggcaagucuggugccagcag
ccgcgguaauuccagcuccaauagcguauauuaaaguuguugcaguuaaa
aagcucguaguugaacuuugggcccgguuggccgguccgaucguguacug
gauuuccaacggggccuuuccuucggacuuuuacuuugaaaaaauuagag
uguucaaagcaggcguauugcucgaauauauuagcauggaauaauagaau
aggacguuugguucuauuuuguugguuucuaggaccaucguaaugauuaa
uagggacggucgggggcaucaguauucaauugucagaggugaaauucuug
gauuuauugaagacuaacuacugcgaaagcauuugccaaggacguuuuca
uuaaucaagaacgaaaguuaggggaucgaagaugaucagauaccgucgua
gucuuaaccauaaacuaugccgacuagggaucgggugguguuuuuuuaau
gacccacucggcaccuuacgagaaaucaaagucuuuggguucugggggga
guauggucgcaaggcugaaacuuaaaggaauugacggaagggcaccacca
ggaguggagccugcggcuuaauuugacucaacacggggaaacucaccagg
uccagacacaauaaggauugacagauugagagcucuuucuugauuuugug
ggugguggugcauggccguucuuaguugguggagugauuugucugcuuaa
uugcgauaacgaacgagaccuuaaccuacuaaauaguggugcuagcauuu
gcugguuauccacuucuuagagggacuaucgguuucaagccgauggaagu
uugaggcaauaacaggucugugaugcccuuagacguucugggccgcacgc
gcgcuacacugacggagccagcgagucuaaccuuggccgagaggucuugg
uaaucuugugaaacuccgucgugcuggggauagagcauuguaauuauugc
ucuucaacgaggaauuccuaguaagcgcaagucaucagcuugcguugauu
acgucccugcccuuuguacacaccgcccgucgcuaguaccgauugaaugg
cuuagugaggccucaggaucugcuuagagaucagagcggagaauuuggac
aaacuuggucauuuagaggaacuaaaagucguaacaagguuuccguaggu
gaaccugcggaaggaucau
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..........>>.>>.........<<<<<((....<.<<<<.....<<..
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>....>>>>>.>>>>>>....<<..>>...<<<<<.<<.......<<...
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...<<...<<<<<<<<.....))))))).>>>>>>>>..>>.....>>..
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...>.>>>>>>..>>.......<<....>>...>>>>...>>>>>.>>>.
..>>>...>>.>....<<<<<<<...<...<<<<.<.....>.>>>>...
>>>>>>>>..........<<<.<<.<<<..<<<<<<<<.<<<........
>>>>>>>>>>>..>>>...<<..]]>>...>>.....>>>.>>>.<<<..
....<<<<....>>>>....>>>..]]]].}<<<<<.<<<<<<<..<<.<
<<<<<..<<<.<<<<<<......<<........>>..........<<<<<
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.<.<<.<<<..<<.<<<<<<....<<<.<<<<<....>>>...<<<....
..>>>...>>.>>>....<<<<<.<<..<<<<..<<<<<.<<<<<<....
>>>>>>...>>>>>..>>>>.>>....<<<<<<.....>>>>>>......
.>>>>>....>>>.>>>.....>>>>>>>>....>.>>>>>...>>.>>>
>.>>>.....<<<<<<<......<<.....<<..<<<<....>>>>..>>
....>>.......>>>>>>>......<....<<<<<<..........>>>
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..>>...>>>>>>>>>>.>>....<..<<.<..<<<<.<<....<<<<<<
<<.<<<..<.<<......<<<<<<<.<<..>>.>>>>>>>......>>.>
..>>>.>>>>>>>>...>>.>>>>...>.>>...>.....<<<<<<<<<.
...>>>>>>>>>.......
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6zce A structural inventory of native ribosomal ABCE1-43S pre-initiation complexes.
Resolution5.3 Å
Binding residue
(original residue number in PDB)		S21 R22 G23 P47
Binding residue
(residue number reindexed from 1)		S16 R17 G18 P42
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0000028 ribosomal small subunit assembly
GO:0000054 ribosomal subunit export from nucleus
GO:0002181 cytoplasmic translation
GO:0006412 translation
GO:0030490 maturation of SSU-rRNA
GO:1900153 positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005840 ribosome
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6zce, PDBe:6zce, PDBj:6zce
PDBsum6zce
PubMed33289941
UniProtP0C0X0|RS28B_YEAST Small ribosomal subunit protein eS28B (Gene Name=RPS28B)

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