Structure of PDB 8b3d Chain c Binding Site BS01

Receptor Information

>8b3d Chain c (length=264) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

MDQKLSKLVEELTTSGEPRLNPEKMKELKKICKSSEEQLSRAYRLLIAQL
TQEHAEIRLSAFQIVEELFVRSHQFRMLVVSNFQEFLELTLGTDPAQPLP
PPREAAQRLRQATTRAVEGWNEKFGEAYKKLALGYHFLRHNKKVDFQDTF
AGKFEPVQHWCRAPRPDGRLCERQDRLKCPFHGKIVPRDDEGRPLDPEDR
AREQRRQLQKQERYPSLTNLKAQADTARARIGRKVFAKAAVRRVVAAMNR
MDQKKHEKFSNQFN

Ligand information

Ligand ID

InChI

InChI=1S/Zn/q+2

InChIKey

PTFCDOFLOPIGGS-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Zn++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Zn+2]

Formula

Name

ZINC ION

PDB chain

8b3d Chain c Residue 1001 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	8b3d Structure of the Pol II-TCR-ELOF1 complex.
Resolution	2.6 Å
Binding residue (original residue number in PDB)	C567 C577 C585 H588
Binding residue (residue number reindexed from 1)	C161 C171 C179 H182
Annotation score	4

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0000993	RNA polymerase II complex binding
GO:0005515	protein binding

	Biological Process
GO:0006281	DNA repair
GO:0006283	transcription-coupled nucleotide-excision repair
GO:0009411	response to UV
GO:0016567	protein ubiquitination

	Cellular Component
GO:0005654	nucleoplasm
GO:0005694	chromosome

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Molecular Function

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Cellular Component

External links

PDB	RCSB:8b3d, PDBe:8b3d, PDBj:8b3d
PDBsum	8b3d
PubMed
UniProt	Q2YD98\|UVSSA_HUMAN UV-stimulated scaffold protein A (Gene Name=UVSSA)

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