Structure of PDB 6tmf Chain c Binding Site BS01

Receptor Information
>6tmf Chain c (length=37) Species: 1293037 (Thermococcus celer Vu 13 = JCM 8558) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MKRRPRKWKKKGRMRWKWIKKRIRRLKKQRRKERGLI
Ligand information
>6tmf Chain A (length=1485) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
auuccgguugauccugccggaggccacugcuauggggguccgacuaagcc
augcgagucauggggcgccuugcgcgcaccggcggacggcucaguaacac
gucgguaaccuacccucgggagggggauaaccccgggaaacuggggcuaa
ucccccauaggccugagguacuggaagguccucaggccgaaaggggcucu
gcccgcccgaggaugggccggcggccgauuagguaguuggugggguaacg
gcccaccaagccgaagaucgguacgggccaugagagugggagcccggaga
uggacacugagacacggguccaggcccuacggggcgcagcaggcgcgaaa
ccuccgcaaugcgggcaaccgcgacggggggacccccagugccguggcaa
cgccacggcuuuuccggaguguaaaaagcuccgggaauaagggcugggca
aggccgguggcagccgccgcgguaauaccggcggcccgagugguggccgc
uauuauugggccuaaagcguccguagccgggcccguaagucccuggcgaa
aucccacggcucaaccguggggcuugcuggggauacugcgggccuuggga
ccgggagaggccggggguaccccugggguaggggugaaauccuauaaucc
cagggggaccgccaguggcgaaggcgcccggcuggaacggguccgacggu
gagggacgaaggccaggggagcgaaccggauuagauacccggguaguccu
ggcuguaaaggaugcgggcuaggugucgggcgagcuucgagcucgcccgg
ugccgaagggaagccguuaagcccgccgccuggggaguacggccgcaagg
cugaaacuuaaaggaauuggcgggggagcacuacaagggguggagcgugc
gguuuaauuggauucaacgccgggaaccucaccgggggcgacggcaggau
gaaggccaggcugaaggucuugccggacacgccgagaggaggugcauggc
cgccgucagcucguaccgugaggcguccacuuaagugugguaacgagcga
gacccgcgcccccaguugccaguccuucccgcuggggaggaggcacucug
gggggaccgccggcgauaagccggaggaaggagcgggcgacgguagguca
guaugccccgaaacccccgggcuacacgcgcgcuacaaugggcgggacaa
ugggauccgaccccgaaaggggaagggaauccccuaaacccgcccccagu
ucggaucgcgggcugcaacucgcccgcgugaagcuggaaucccuaguacc
cgcgugucaucaucgcgcggcgaauacgucccugcuccuugcacacaccg
cccgucacuccacccgagcgggguccggaugaggccugaucucccuucgg
ggaggucgggucgagucugggcuccgugaggggggagaagucguaacaag
guagccguaggggaaccuacggcucgaucaccucc
..<<<<<<.[.((((>>>>>><<<<<<<<<..<<<<<<.<<......<<<
.<<<..<<<..<<.<<<<.....>>>>.>>>>>......<<........<
<<<<<<..<<...<<<<<<<.<<<<<....<<<<<<....>>>>>>....
.>>>>>...<<<<<<<<<.<<......>>>>>>>>>>>.....<<<<...
>>>>.>>>>>>>..>>>>>>>>>.<<<....<<<..<<<<<<<<......
.>>>>>>>>>>>......>>>..<<<<<<<<....>>>>...>>>>.>>.
<<<<<............>>>>>.<<<<....>>>>...>>>>>>......
...<<<....<<<<....>>>>..>>>..>>.>>>>>>..<<<<<<<<..
.>>>>>>>>...<<<<<<<<.......>>>>>>>>.....<<<<<((...
...<<<<.....<<..))>>.......>>>>.>>>>>..>>>>>>>>>..
........<<<((.....<<<<...<<<.<<<<<<<.<<<<<<<<<<...
.<<<<<<<<.....>>>>>>>>...>>>>>>>>..>>>>>>>>>...<<<
<<<.....<<<<<<<<<..<<<<<<<<<..<<<......>>>.....>>>
>>>>>>..>>.......<<....>>.>>>>>>>....>>>.>>>...>>>
...>>>>...<<<<<<<...<<...<<<<.<.....>.>>>>...>>>>>
>>>>.........<<<<<<..<<<<<<<<<<<<<<.....>>>>>>>>>>
>>>>...<<..))>>.....>>>>>>.>>>.<<<......<<<<....>>
>>....>>>..)))).]<<<<<.<<<<<<<..<<.<<<<<<..<<<<<<<
<<<......<<........>>..........<<<<<<<...<<<<.....
....<...<<<.....>>>....>......>>>>...<<.<<<..<<<<<
<<<<....<<<<<<.<<....>>...<<<<......>>>>..>>>>>>..
..<<<<<.<<<<<<<..<<...<<<<<<<<...>>>>>>>>.>>...>>>
>>>>.....<<<<<.....>>>>>........>>>>>....>>>.>>>..
.>>>>>>>>....>>>>>>>...>>.>>>>>>>>.....<<<<<<<....
.<<<..<<..<<<<....>>>>..>>....>>>.....>>>>>>>.....
......<<<<<<<........>>>>>>>..........>>>>>>.....<
<<<<<<.......>>>>>>>.......>>...>>>>>>>>>>.>>....<
..<<.<.<<<<.<<<..<<<<<<<<<<<<<..<<<<<<<<<<<<<....>
>>>>>>>>>>>>..>>>>>>>>>>>>>..>>>.>>>>..>.>>...>...
..<<<<<<<<<....>>>>>>>>>...........
Receptor-Ligand Complex Structure
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PDB6tmf Molecular analysis of the ribosome recycling factor ABCE1 bound to the 30S post-splitting complex.
Resolution2.8 Å
Binding residue
(original residue number in PDB)
M1 K2 R3 R4 R6 K7 W8 K9 K10 K11 M14 R15 W16 K17 W18 K20 K21 R22 I23 R24 R25 K27 K28 R30 R31
Binding residue
(residue number reindexed from 1)
M1 K2 R3 R4 R6 K7 W8 K9 K10 K11 M14 R15 W16 K17 W18 K20 K21 R22 I23 R24 R25 K27 K28 R30 R31
Enzymatic activity
Enzyme Commision number ?
Gene Ontology

View graph for
Cellular Component
External links
PDB RCSB:6tmf, PDBe:6tmf, PDBj:6tmf
PDBsum6tmf
PubMed32064661
UniProtA0A218P2S9

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