Structure of PDB 7bgd Chain b Binding Site BS01

Receptor Information
>7bgd Chain b (length=163) Species: 93061 (Staphylococcus aureus subsp. aureus NCTC 8325) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MKQLLEAGVHFGHQTRRWNPKMKKYIFTERNGIYIIDLQKTVKKVDEAYN
FLKQVSEDGGQVLFVGTKKQAQESVKSEAERAGQFYINQRWLGGLKFLGG
IRDMKSMPQALFVVDPRKEPIVGIVDTNCDPDEIDYVIPANDDAIRAVKL
LTAKMADAILEGQ
Ligand information
>7bgd Chain a (length=1096) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
cuggagaguuugauccuggcucaggaugaacgcuggcggcgugccuaaua
caugcaagucgagcgaacggacgagaagcuugcuucucugauguuagcgg
cggacgggugaguaacacguggauaaccuaccuauaagacugggauaacu
ucgggaaaccguagcuaauaccggauaauauuuugaaccgcaugguucaa
aagugaaagacggucuugcugucacuuauagauggauccgcgcugcauua
gcuaguugguaagguaacggcuuaccaaggcaacgaugcauagccgaccu
gagagggugaucggccacacuggaacugagacacgguccagacuccuacg
ggaggcagcaguagggaaucuuccgcaaugggcgaaagccugacggagca
acgccgcgugagugaugaaggucuucggaucguaaaacucuguuauuagg
gaagaacauauguguaaguaacugugcacaucuugacgguaccuaaucag
aaagccacggcuaacuacgugccagcagccgcgguaauacguagguggca
agcguuauccggaauuauugggcguaaagcgcgcguaggcgguuuuuuaa
gucugaugugaaagcccacggcucaaccguggagggucauuggaaacugg
aaaacuugagugcagaagaggaaaguggaauuccauguguagcggugaaa
ugcgcagagauauggaggaacaccaguggcgaaggcgacuuucuggucug
uaacugacgcugaugugcgaaagcguggggaucaaacaggauuagauacc
cugguaguccacgccguaaacgaugagugcuaaguguuaggggguuuccc
gccccuuagugcugcagcuaacgcauuaagcacuccgccuggggaguacg
accgcaagguugaaacucaaaggaauugacggggaccgucuuguacacac
cgcccgucacaccacgagaguuuguaacacccgaagccgguggaguaacc
uuuuaggagcuagccgucgaaggugggacaaaugauuggggugaagucgu
aacaagguagccguaucggaaggugcggcuggaucaccuccuuucu
.....<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<.....<<
<.<<<..<<<..<<.<<<<......................>>>>.>>>>
>......<<........<<<<<<<..<<...<<<<<<<.<<<<.....<<
.<<<....>>>.>>......>>>>......<<<<<<<<<<..>>>>>>>>
>>......<<<<<<...>>>>>>.>>>>>>>..>>>>>>>>>.<<<....
<<<..<<<<<<<<.......>>>>>>>>>>>......>>>..<<<<<<<<
....>>>>...>>>>.>>.<<<<<.<.........>>>>>>.<<<<<..>
>>>>...>>>>>>.........<<<....<<<<....>>>>..>>>..>>
.>>>>>>..<<<<......<<<<....>>>>.....>>>>...<<<<<<<
........<<.<<................>>.>.>......>>>>>>...
>..<<<<<(((...<<<<<.....<<.)))>>.......>>>>>>>>>>.
.>>>>>>>>>..........<<<((.....<<<<<..<<<.<<<<<<<.<
<<<<<<<<.......<<<<<<.....>>>>>>.....>>>>>>>..>>>>
>>>>>...<<<<<<<<...<<<<<<<....<<<<<<<<...<<<......
>>>......>>>>>>>>...........<<....>>.>>>>>>>..>>>>
>.>>>...>>>..>>>>>....<<<<<<<...<...<<<<.<.....>.>
>>>...>>>>>>>>..........<<<<<<..<<<<<<<<<<<<<.....
>>>>>>>>>>>>>...<<..))>>.....>>>>>>.>>>.<<<......<
<<<....>>>>....>>>..)))).]<<<<<.<<<<.>>>>>>>.>>...
.<..<<.<.<<<<.<<<..<<<<<<..<<<<....<.<<<<..<<<..<<
<...>>>.>>>.>>>>.>...>>>>..>>>>>>..>>>.>>>>..>.>>.
..>.....<<<<<<<<<....>>>>>>>>>................
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7bgd Stabilization of Ribosomal RNA of the Small Subunit by Spermidine in Staphylococcus aureus
Resolution3.2 Å
Binding residue
(original residue number in PDB)		R21 W23 P25
Binding residue
(residue number reindexed from 1)		R16 W18 P20
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7bgd, PDBe:7bgd, PDBj:7bgd
PDBsum7bgd
PubMed
UniProtQ2FZ25|RS2_STAA8 Small ribosomal subunit protein uS2 (Gene Name=rpsB)

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