Structure of PDB 7asn Chain b Binding Site BS01

Receptor Information
>7asn Chain b (length=48) Species: 1280 (Staphylococcus aureus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AVPKRRTSKTRKNKRRTHFKISVPGMTECPNCGEYKLSHRVCKNCGSY
Ligand information
>7asn Chain A (length=2742) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uuaaguuauuaagggcgcacgguggaugccuuggcacuagaagccgauga
aggacguuacuaacgacgauaugcuuuggggagcuguaaguaagcuuuga
uccagagauuuccgaauggggaaacccagcaugaguuaugucauguuauc
gauaugugaauacauagcauaucagaaggcacacccggagaacugaaaca
ucuuaguacccggaggaagagaaagaaaauucgauucccuuaguagcggc
gagcgaaacgggaagagcccaaaccaacaagcuugcuuguugggguugua
ggacacucuacggaguuacaaaggacgacauuagacgaaucaucuggaaa
gaugaaucaaagaagguaauaauccuguagucgaaaauguugucucucuu
gaguggauccugaguacgacggagcacgugaaauuccgucggaaucuggg
aggaccaucuccuaaggcuaaauacucucuagugaccgauagugaaccag
uaccgugagggaaaggugaaaagcaccccggaaggggagugaaauagaac
cugaaaccgugugcuuacaaguagucagagcccguuaaugggugauggcg
ugccuuuuguagaaugaaccggcgaguuacgauuugaugcaagguuaagc
aguaaauguggagccguagcgaaagcgagucuagggcguuuaguauuugg
ucguagacccgaaaccaggugaucuacccuuggucagguugaaguucagg
cugaauggaggaccgaaccgacuuacguugaaaagugagcggaugaacug
aggguagcggagaaauuccaaucgaaccuggagauagcugguucucuccg
aaauagcuuuagggcuagccucaagugaugauuauuggagguagagcacu
guuuggacgaggggccgguuaccgaauucagacaaacuccgaaugccaau
uaauuuaacuugggagucagaacaugggugauaagguccguguucgaaag
ggaaacagcccagaccaccagcuaaggucccaaaauauauguuaagugga
uguggcguugcccagacaacgucgagugacacugcgccgaaaauguaccg
gggcuaaacauauuaccgaagcuguggauuguccuuuggacaaugguagg
agagcguucuaagggcguugaagcaugaucguaaggacauguggagcgcu
uagaagugagaaugccggugugaguagcgaaagacgggugagaaucccgu
ccaccgauugacuaagguuuccagaggaaggcucguccgcucuggguuag
ucggguccuaagcugaggccgacaggcguaggcgauggauaacagguuga
uauuccuguaccaccuauaaucguuuuaaucgauggggggacgcaguagg
auaggcgaagcgugcgauuggauugcacgugauuucacacugccgagaaa
agccucuagauagaaaauaggugcccguaccgcaaaccgacacagguagu
caagaugagaauucuaaggugagcgagcgaacucucguuaaggaacucgg
caaaaugaccccguaacuucgggagaaggggugcucuuuaggguuaacgc
ccagaagagccgcagugaauaggcccaagcgacuguuuaucaaaaacaca
ggucucugcuaaaccguaaggugauguauaggggcugacgccgcccggug
cuggaagguuaagaggagugguuagcuucugcgaagcuacgaaucgaagc
cccaguaaacggcggccguauaacgguccuaagguagcgaaauuccuugu
cggguaaguuccgacccgcacgaaaggcguaacgauuugggcacugucuc
aacgagagacucggugaaaucauaguaccugugaagaugcagguuacccg
cgacaggacggaaagaccccguggagcuuuacuguagccugauauugaaa
uucggcacgcuuguacaggauagguaggagccuuugaaacgugagcgcua
gcuuacguggaggcgcuggugggauacuacccagcuguguuggcuuucua
acccgcaccacuuaucguggugggagacagugucaggcgggcaguuugac
uggggcggucgccuccuaaaagguaacggaggcgcucaaagguucccuca
gaaugguuggaaaucauucauagaguguaaaggcauaagggagcuugacu
gcgagaccuacaagucgagcagggucgaaagacggacuuagugauccggu
gguuccgcauggaagggccaucgcucaacggauaaaagcuaccccgggga
uaacaggcuuaucucccccaagaguucacaucgacggggagguuuggcac
cucgaugucggcucaucgcauccuggggcuguagucggucccaaggguug
ggcuguucgcccauuaaagcgguacgcgagcuggguucagaacgucguga
gacaguucggucccuauccgucgugggcguaggaaauuugagaggagcug
uccuuaguacgagaggaccgggauggacauaccucugguguaccaguugu
cgugccaacggcauagcuggguagcuauguguggacgggauaagugcuga
aagcaucuaagcaugagccccccucaagaugagauuucccaacuucgguu
auaagaucccucaaagaugaugagguuaauagguucgagguggaagcaug
gugacauguggagcugacgaauacuaaucgaucgaacuuaau
<<<.........<<<<<<<<<<<....{[[..[[<<<<<<<[[.<.....
.<<<<<<.((..((.>>>.....<<<<<<<..<<<))..)).>>>.....
>>>>>>>...>>>....<<<....>>><<<<<<<......>>>>>>>.<<
<<<<<<<.........>>>>>>>.>>.>.....<<<<<......<.....
.>.......>>>>.>.........<<....>>..<<<<<......<<...
..>>.....>>>>>..(((.....<.<...<....>....>.>......<
<<.<<<<<...<<<<.........<.<<<<<<.<<<...<<<<<......
>>>>>((......<<<.....))>>>...>>>...>>>>>>.>..>>>>.
>>>>>...>>>.....<<<<<<<<.........>>>>>>>>......<<<
<<..<<<<>>>>>..)))......]].>>>>>>>.]].............
..<<....>>....]].........<<<<....>>>>.............
}....>>>>>>>>>>>.......<<<<..<<<<......>>>>..>>>>.
..<.<........>.>.<<<<<<....<<<<<<<.<<<<<..<<<...<<
<.....>>>...>>>...<<....>>..<<<<.>>>>.....>>>>>.>>
>>>>>..<<.<...<<<<<<.....<<<<<<<<<..<<<......<<<<.
>>>>.......>>>...<<<.<<<<<........>>>>>>>>....>>>>
>>>>>...<<<.....>>>......>>>>>>......>.>>..<<<<<<.
...<<<<<....>>>>><<<<<<<<<...<<<<.<<<<......<<...<
<<<<.<<....<.........>....>>.>>>>>..>>.......>>>>.
.>>>>..>>>>>>>.>>..<<<<<<<<<<......>>>>>>>>>>....<
<<......>>>...<<<<.<<<...<<<(((.....<<<<<<.....<<.
.<<<..<<<<................>>>>..>>>.>>...........)
)).....>>>>>>.>>>...>>>>>>><<<<<<.....>>>>>>....>>
>>>>..<<<<<<<.<<......<<<<<.<<....>>.>>>>>...>>.>>
>>>>>........>>>>>><......<<....<<<<<<.......>>>>>
><<<<....<<<<<.<<...<<<<<<...<<.....>>.>>>>>>....(
(<<<<.<<...<<<...<<<....>>>...>>>...>>...<<<<<....
....>>>>>))<<<<<<<...........<....<<<<....<<<<...<
<.................................>>...>>>>.......
..>>>>...>......>>>>>>>>>>>..>>.....<<......>>>>>>
>.<<<.......>>>..>>>>..<<<<....<<<<<<<<.<<........
.<......<<<<....<....>.....>>>>.<<<<<<<.<.........
.>.>>>>>>>............<<<<<<<....<<<.........>>>..
<<<<<<<.....<<<....>>>.......>>>>>>>.<<<<<..<.....
........<........<<<.<.............>.>>>........>.
...........>.<<<<<.....>>>>>....................<<
..<........>.>>..........>>>>>.....>>>>>>>..>..>>.
>>>>>>>>.>>>>>>.....>.....<<<<<........>>>>>..<<<<
<<<<.(((.[[......<<<<.[[<<<<..<<<<<.<<<<<<<<<.<<<<
.<<<<<<<...............<<<<..<<<........<<<.......
...>>>.....>>>............>>>>......>>>>>>>.>>>>..
..<<.<<<<<<.....>>>>>>>>.....>>>>>>>>>..>>>>>..<<<
<.....>>>><<<<<<...........>>>>>>..<<...<<<<<<<...
<<<<<<.......>>>>>>.....<<.[.(((>>....>>>>>>>...<<
<<..<<<......>>>..>>>>.<<<....>>>.>>)))]......<<<<
<<<.((..>>>>..))>>>>>>>.............>>>>..]]>>>>..
.....<<<<...<<.<<<<..<<.......>>...>>>>.>>...>>>.>
.......<<<<<.<<<<<<..<<<<<<<..........>>>>>..>>.<<
<<<.....>>>>>.....>>>>>..>...>>>.>>....<<<<<<<....
>>>.>>>>....]]..)))>>>>>>>>....<<<<<<<.....<<...<.
.........................>......<....<.....<.<.<..
<.<......>>....>.>.>.....>..>........<<....<<<<<..
.........>>>>>....>>..>>........>>>>>>>..<<....>>.
....<..<.<...........>.>.......<.<<..<<.<.......<.
...>........>>>...>>.>.........>.....>.>>.
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7asn Staphylococcus aureus 50S after 30 minutes incubation a 37C
Resolution2.73 Å
Binding residue
(original residue number in PDB)
A2 V3 P4 K5 R6 R7 T8 S9 K10 T11 R12 K13 K15 R16 R17 T18 H19 T28 E29 P31 Y36 S39 H40
Binding residue
(residue number reindexed from 1)
A1 V2 P3 K4 R5 R6 T7 S8 K9 T10 R11 K12 K14 R15 R16 T17 H18 T27 E28 P30 Y35 S38 H39
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0015934 large ribosomal subunit

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:7asn, PDBe:7asn, PDBj:7asn
PDBsum7asn
PubMed
UniProtQ2FZF1|RL32_STAA8 Large ribosomal subunit protein bL32 (Gene Name=rpmF)

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