Structure of PDB 8r6f Chain a Binding Site BS01

Receptor Information
>8r6f Chain a (length=98) Species: 4565 (Triticum aestivum) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFLVRNIVEQAAVR
DVQEACVHDGYVLPKLYAKVHHCVSCAIHAHIVRVRSRENRRNREPPQ
Ligand information
>8r6f Chain A (length=1177) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uaccugguugauccugccaguagucauaugcuugucucaaagauuaagcc
augcaugugcaaguaugaaccaaugaacugugaaacugcgaauggcucau
uaaaucaguuauaguuuguuugaugguauacucggauaaccguaguaauu
cuagagcuaauacgugcaacaaaccccgacuucugggaggggcgcauuua
uuagaugaugauucaugauaacucgacggaucgcacggccgccggcgacg
caucauucaaauuucugcccuaucaacuuucgaugguaggauaggggccu
accaugguggugacgggugacggagaauuaggguucgauuccggagaggg
agccugagaaacggcuaccacauccaaggaaggcagcaggcgcgcaaauu
acccaauccugacacggggagguagugacaauaaauaacaauaccggggu
cugguaauuggaaugaguacaaucuaaaucccuuaacgaggauccauugg
agggcaagucuggugccagcagccgcgguaauuccagcuccaauagcgua
uauuuaaguuguugcaguuaaaaagcucguaguuggaccuugggccgcga
ccccguuacuuugaagaaauuagagugcucaaagcaagccaucgcucugg
auacauuagcaugggauaacaucauaggauuccgguccuagggaucggag
uaaugauuaauagggacagucgggggcauucguauuucauagucagaggu
gaaauucuuggauuuaugaaagacgaacaacugcgaaagcauuugccaag
gauguuuucauuaaucaagaacgaaaguugggggcucgaagacgaucaga
uaccguccuagucucaaccauaaacgaugccgaccagggaucggcggaug
uugcuuaggacuccgccggcaccuuaugagaaaucaaagucuuuggguuc
cggggggaguauggucgcaaggcugaaacuuaaaggaauugacggaagug
guggagcgauuuguccuuuguacacaccgcccgucgcuccuaccgauuga
augguccggugaaguguucggaucgcggcgacggccgacgucgcgagaag
uccauugaaccuuaucauuuagaggaaggagaagucguaacaagguuucc
guaggugaaccugcggaaggaucauug
...<<<<<.[.((((>>>>>.<<<.<<<<<<...<.<...<......<<<
.<<<..<<....<<....<<.........>>...>>.>>......<<...
.....<<<..<<..<<....<<<<<.......<<.....<..<<<.....
>>>..>......>>.........<<<<..<<...>>..>>>>.....<<<
<<<............>>>>>>.........<<<<..<<<.>>>.>>>>..
>>>>>...>>>>..>>>.<<<....<<<....<<<<<<<<.......>>>
>>>>>>>>......>>>...<<<.<<<<....>>>>....>>>.>>.<<.
<<<..........>>>.>>.<.<<....>>.>...>>>>>>.........
<<<....<<<.....>>>..>>>..>....>.>.....<<<<<<<<.<.>
.>>>>>.>>>......<<..<...........>..>>.........<<<<
<((......<<<<.....<<..))>>.......>>>>.>>>>>..>>>>>
>>>>..........<.<((.....<.<<...<<<.<.....<<<.<..>.
>>>.<<<<<<.<<.......<<...<.......>..<<<....>>>....
.>>......>>.>>..>>>>.........<<<<<<<<<<.>>>>>>>>>>
.......>....<<<<<<.<<...<<<<..<<..<<<<<<<<...<<<..
....>>>......>>>>>>>>..>>.......<<....>>...>>>>...
>>>>>.>>>...>>>...>>.>....<<<<<<<...<...<<<<.<....
.>.>>>>...>>>>>>>>..........<<<.<<.<<<..<<<<<<<<.<
<<.<<.>>>>>>>>>>>>>..>>>...<<..))>>...>>.....>>>.>
.>.<<<......<<<<....>>>>....>>>..)))).]<<<<<.<<<..
..<<<....>>>...>>>>>>.>>....<..<<.<.<<<<<.<<.....<
<<<<<..<<<..<<<<..<...<<<<<<...<<..>>...>>>>>>...>
..>>>>..>>>..>>>>>>....>>.>>>>>..>.>>...>.....<<<<
<<<<<....>>>>>>>>>.........
Receptor-Ligand Complex Structure
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PDB8r6f High-Resolution Structure and Internal Mobility of a Plant 40S Ribosomal Subunit.
Resolution2.34 Å
Binding residue
(original residue number in PDB)		T2 F3 K4 R5 R6 N7 G8 G9 R10 N11 H13 G14 R15 G16 H17 Y20 K32 K34 K37 R38 F39 K70 V75 S76 I79 H80 V84 R85 V86 R87 S88 R89 R92 R93 R95 P98
Binding residue
(residue number reindexed from 1)		T1 F2 K3 R4 R5 N6 G7 G8 R9 N10 H12 G13 R14 G15 H16 Y19 K31 K33 K36 R37 F38 K69 V74 S75 I78 H79 V83 R84 V85 R86 S87 R88 R91 R92 R94 P97
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003729 mRNA binding
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
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Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8r6f, PDBe:8r6f, PDBj:8r6f
PDBsum8r6f
PubMed38139282
UniProtA0A3B6KQB8

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