Structure of PDB 7ode Chain Z Binding Site BS01

Receptor Information
>7ode Chain Z (length=103) Species: 83333 (Escherichia coli K-12) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MYAVFQSGGKQHRVSEGQTVRLEKLDIATGETVEFAEVLMIANGEEVKIG
VPFVDGGVIKAEVVAHGRGEKVKIVKFRRRKHYRKQQGHRQWFTDVKITG
ISA
Ligand information
>7ode Chain I (length=1990) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
gguuaagcgacuaagcguacacgguggaugcccuggcagucagaggcgau
gaaggacgugcuaaucugcgauaagcgucgguaaggugauaugaaccguu
auaaccggcgauuuccgaauggggaaacccaguguguuucgacacacuau
cauuaacugaauccauagguuaaugaggcgaaccgggggaacugaucuaa
guaccccgaggaaaagaaaucaaccgagauucccccaguagcggagcgaa
cggggagcagcccagagccugaaucaguguguguguuaguggaagcgucu
ggaaaggcgcgcgauacagggugacagccccguacacaaaaaugcacaug
cugugagcucgaugaguagggcgggacauccugucugaauagggggccau
ccuccaaggcuaaauacuccugacugaccgauagugaaccaguaccguga
gggaaaggcgaaaagaaccccggcgaggggagugaaaaagaaccugaaac
cguguacguacaagcagugggagcacgcaggcgugugacugcguaccuuu
uguauaaugggucagcgacuuauauucuguagcaagguuaaccgaauagg
ggagccgaaguugcaggguauagacccgaaacccggugaucuagccaugg
gcagguugaagguuggguaacacuaacuggaggaccgaaccgacuaaugu
ugaaaaauuagcggaugacuuguggcugggggugaaaggccaaucaaacc
gggagauagugguucuccccgaaagcuaguagcgccucgugaauucaucu
ccgcggagaauguuaucacgggagacacacggcgggugcaaguccgucgu
gaagagggaaacaacccagaccgccagcuaaggucccaaagucaugguua
agugggauguaacggggcuaaaccaugcaccgaagcugcggcagcgacgc
gcguuguuggguaggggagcguucuguaagccugcgaaggugugcuguga
ggcaugcuggagguaucagaagugcgaaugcugacauaaguaacgauaaa
gcgggugaaaagcccgcucgccggaagaccaaggguuccuguccaacguu
aaucggggcagggugagucgaccccuaaggcgaggccgaaaggcguaguc
gaugggaaacagguuaauauuccuguacuugguguuacugcgaagggggg
acggagaaggcuauguuggccgggcgacgguugucccgguuuaagcgugu
aggcugguuuuccaggcaaauccggaaaaucaaggcugaggcgugaugac
gaggcacuggugcugaagcaacaaaugcccugcuuccaggaaaagccucu
aagcacagguaacaucaaaucguaccccaaaccgacacagguggucaggu
agagaauaccaaggcgcuugagagaacucgggugaaggaacuaggcaaaa
uggugccguaacuucgggagaaggcacgcugauauguaggugaggucccc
gcggauggagcugaaaucagucgaagauaccagcuggcugcaacuguuua
uuaaaaacacagcacugugcaaacacgaaaguggacguauacggugugac
gccuuggcguaaugauggccaggcugucuccacccgagacucagugaaau
ugaacucgcugugaugcaguguacccgcggcaagaggaguugacccguau
ccggguugcucccuaucugccgugggcgcuggagaacugaggggggcugc
uccuaguacgagaggaccggaguggacgcaucacugguguucggguuguc
augccaauggcacugcccgguagcuaaaugcggaagagauaagugcgcac
gaacuugccccgagaugaguucucccugacccuuuaaggguccugaagga
acguugaagacgacgacguugauaggccggguguguaagcgcagcgaugc
guugagcuaaccgguacuaaugaaccgugaggcuuaaccu
<<<<<<<<......<<<<<<<<<<<.....<<..<<<<<<<<<<<<<...
...<<<<<<....(((.>>>.....<<<<<<<..<<<)))....>>>...
...>>>>>>>...>>>....<<<....>>><<<<<<<....>>>>>>>.<
<<<<<<<<.........>>>>>>>>>.>>...<<<<<<.....<..>...
...>>>>>.>...<.....<<....>>..<<<<<<.....<<...>>...
.>>>>>>..<<<..<<<<......<<<<<<<<<<<<<.<<<...<<<<<.
.....>>>>>((......<<<.....))>>>...>>>...>>>>>>>>>>
>>>...>>>>........<<<<<<<<..>>>>>>>>.....<<<<.....
.>>>>..>>>....>.>>.>>>>>>>.>>...............<<....
>>....>>.........<<<<.....>>>>..................>>
>>>>>>>>>.......<<<<..<<<<<<..>>>>>>..>>>>...<.<<.
.....>>.>.<<<<<<<..<<<<<<<<<<<<<<..<<<...<<.....>>
...>>>...>>>>>>>>>>>>>>.<<.....<<<<<<.....<<<<<<<<
<..<<<....<<<<<<......>>>>>>.....>>>...<<<.<<<<<..
......>>>>>>>>....>>>>>>>>>...<<<.....>>>......>>>
>>>.......>>..<<<<<<....<<<<.>>>>.<<<<<<<<...<<<<<
<<..>>>>.>>>...>>>>>>>.>...<<<<<<<<<......>>>>>>>>
>....<<<......>>>...<<<<.<<<...<<<(((.....<<<<<<..
.............))).....>>>>>>.>>>...>>>>>>><<<<<<<<.
.>>>>>>>>....>>>>>><.<<<<<...<<<......<<<<<<<<....
>>>>>>>>...>>>..>>>>>..>....>>>>>>><......<<.....<
<<<<<.......>>>>>><<<<....<<<<<.<<...<<<<<<...<<..
...>>.>>>>>>....((<<<.<<<...<<<...<<<....>>>...>>>
...>>>..<<<<<........>>>>>))<<<<<<<<<<<<<...<<<<..
..<<<<..<<<..<<<<<<<<<<<....(((...>>>>>><<..<<<<..
.<<<<<<<<<<<<.<<.....>>>>>>>>>>..>>>>...>>>>...>><
..<<<<<..>>>>>...>>>>>>...>>>...>>>>.........>>>>.
..>>...>>>>>>>>>>>.>>>..>>.....<<......>>>>>>>.<<<
<.....>>>>..>>>>..<<<<....<<<<<<<<.<<.............
..<<<<<...............>>>>><<<<<<.....<<<...<<<<..
..>>>>...>>>...>>>>>>............<<<<<<<<<..<<<...
......>>>..<<<<<<<.....<<<....>>>.......>>>>>>>.<<
<<<..>>>>>..>>.>>>>>>>.....>>.>>>>>>>>.>>>>>>.....
>.....<<<<<.....>>>>>..<<<<<<<<.<<<<<..<.<<<<<<...
.>>>>>>>...>>..>>>>>>>>>>>....<<<<<<<...<<<<..<<<<
<<<...............>>>>>>>.<<<<<...<<<<...<<<<<<<<<
<<))).>>>>>>..>>>>>...>>>>.>>>>>...<<<....<<<<>>>>
...>>>.>>>>.......>>>>>>>..<<<<<.....>>>>><....<<.
.<<<<<.......>>>>>....<<<<<<<<..<<....<<<<<....>>>
>>...>>...>>>>>.>>>.....>>..>..>>>>>>>>.
Receptor-Ligand Complex Structure
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PDB7ode Structural Consequences of Deproteinating the 50S Ribosome.
Resolution2.84 Å
Binding residue
(original residue number in PDB)		G8 K10 E23 K24 R68 K71 I74 R78 R79 R80 K81 K85 Q86 Q87 G88 H89 R90 Q91
Binding residue
(residue number reindexed from 1)		G8 K10 E23 K24 R68 K71 I74 R78 R79 R80 K81 K85 Q86 Q87 G88 H89 R90 Q91
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0002181 cytoplasmic translation
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:7ode, PDBe:7ode, PDBj:7ode
PDBsum7ode
PubMed36358955
UniProtP0AG48|RL21_ECOLI Large ribosomal subunit protein bL21 (Gene Name=rplU)

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