Structure of PDB 5h1s Chain Z Binding Site BS01

Receptor Information
>5h1s Chain Z (length=90) Species: 3562 (Spinacia oleracea) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DELKELRTKTNEQLNEEILQLKGELFMLRLQRSARENFKPSDFGRMRKRV
ARMLTVKREREIEQGVGKRLSRKLDKAWKRSIVVRPPPSL
Ligand information
>5h1s Chain A (length=2799) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uucaaacgaggaaaggcuuacgguggauaccuaggcacccagagacgagg
aagggcguauuaaucgacgaaaugcuucggggaguugaaaauaagcagag
auccggagauucccgaauaggucaaccuuucgaacuucugcugaauccau
gggcaggcaagagacaaccuggcgaacugaaacaucuuaguagccagagg
aaaagaaagcaaaagcgauucccguaguagcggcgagcgaaaugggagca
gccuaaaccgugaaaacgggguugugggagagcaauacaagcgucgugcu
gcuaggcgaaucaguggagugcggaacccuagauggugaaaguccaguag
ccgaaagcaucacuagcuuaugcucugacccgaguagcauggggcacgug
gaaucccgugugaaucagcaaggaccaccuugcaaggcuaaauacuccug
ggugaccgauagcgaaguaguaccgugagggaagggugaaaagaaccccc
aucggggagugaaauagaacaugaaaccguaagcucucaagcagugggag
ggggaacccugaccgcgugccuguugaagaaugagccggcgacucauagg
caguggcuugguuaagggaacccaccggagccguagcgaaagcgagucuu
cauagggcaauugucacugcuuauggacccgaaccugggugaucuaucca
ugaccaggaugaagcuugggugaaacuaaguggagguccgaaccgacuga
uguugaagaaucagcggaugaguugugguuaggggugaaaugccacucga
acccagagcuagcugguucuccccgaaaugcguugaggcgcagcaguuga
cuggacaucuagggguaaagcacuguuucggugcgggccgcgagagcggu
accaaaucgaggcaaacucugaauacuagauaugaccuccaaauaacagg
ggucaaggucggccagugagacgaugggggauaagcuucaucgucgagag
ggaaacagcccggaucaccagcuaaggccccuaaaugaccgcucagugau
aaaggagguaggggugcagagacagccaggagguuugccuagaagcagcc
acccuugaaagagugcguaauagcucacugaucgagcgcucuugcgccga
agaugaacggggcuaagcggucugccgaagcugugggauguaaaaaaaca
ucgguaggggagcguuccguguuagggagaaacgcgugcgugagccgcgu
uggacgaagcggaagcgagaaugucggcuugaguaacgcaaacauuggug
agaauccaaugccccgaaaaccuaaggguuccuccgcaagguucguccac
ggagggugagucagggccuaagaucaggccgaaaggcguagucgauggac
aacaggugaauauuccuguacuaccccuuguuggucccgagggacggagg
aggcuagguuagccgaaagaugguuaucgguucaaggacgcaaggugacc
cugggguaagaagggguagagaaaaugccucgagccaauguucgaguacc
aggcgcuacggcgcugaaguaaccgaugccauacucccaggaaaagcucg
aacgaccuucaacaaaaggguaccuguacccgaaaccgacacagguaggu
agguagagaauaccuaggggcgcgagacaacucucucuaaggaacucggc
aaaauagccccguaacuucgggagaaggggugcccccucacaaagggggu
cgaagugaccaggcccgggcgacuguuuaccaaaaacacaggucuccgca
aagucguaagaccauguaugggggcugacgccugcccagugccggaaggu
caaggaaguuggugaccugaugacaggggagccggcgaccgaagccccgg
ugaacggcggccguaacuauaacgguccuaagguagcgaaauuccuuguc
ggguaaguuccgacccgcacgaaaggcguaacgaucugggcacugucucg
gagagaggcucggugaaauagacaugucugugaagaugcggacuaccugc
accuggacagaaagacccuaugaagcuuuacuguucccugggauuggcuu
ugggcuuuuccugcgcagcuuagguggaaggcgaagaaggcccccuuccg
ggggggcccgagccaucagugagauaccacucuggaagagcuagaauucu
aaccuugugucaggaccuacgggccaagggacauucucagguagacaguu
ucuauggggcguaggccucccaaaagguaacggaggcgugcaaagguuuc
cucgggccggacggagauuggcccucgagugcaaaggcagaagggagcuu
gacugcaagacccacccgucgagcagggacgaaagucggccuuagugauc
cgacggugccgaguggaagggccgucgcucaacggauaaaaguuacucua
gggauaacaggcugaucuuccccaagaguucacaucgacgggaagguuug
gcaccucgaugucggcucuucgccaccuggggcuguaguauguuccaagg
guugggcuguucgcccauuaaagcgguacgugagcuggguucagaacguc
gugagacaguucgguccauauccggugugggcguuagagcauugagagga
ccuuucccuaguacgagaggaccgggaaggacgcaccucugguguaccag
uuaucgugcccacgguaaacgcuggguagccaagugcggagcggauaacu
gcugaaagcaucuaaguaguaagcccaccccaagaugagugcucuccua
..............<<<<<<<<<<.....<<..<<<<<<<<<<<......
..<<<<<<.....((.>>>.....<<<<<<.<.<<.))......>>....
.>>>>>>>...>>>....<<<....>>>........<<<<..........
...>>>>..........<<<<<<.....<......>......>>>>>.>.
..<.....<<....>>..<<<<<<.....<<.....>>....>>>>>>..
<<<....<<<<....>>>>.......<<.<<<<......<<<...<<<.<
<<<.<<<...<<.<<.....>>.>>((......<<<.....))>>>...>
>>...>>>>.>>>..>>>...>>>>...>>......<<<<<<<<......
...>>>>>>>>......<<<<<..((((>>>>>..>>>....>.>>.>>>
>>>>.>>...............<<....>>....>>.........<<<<.
...>>>>..................>>>>>>>>>>........<<<<..<
<<<...>>>>..>>>>...<.<........>.>.<<<<<<....<<<<<<
<<<<<<...<<<...<<.......>>...>>>...<<....>>..<<<<.
....>>>>.....>>>>>>>>>>>>..<<.<...<<<<<<.....<.<<<
<<<<..<<<....<<<<<<......>>>>>>.....>>>...<<<.<<<<
<........>>>>>>>>....>>>>>>>.>...<<<.....>>>......
>>>>>>......>.>>..<<<<<<....<<<<<....>>>>><<.<<<<<
<<....<<<<<<.....<<<...<<<<<<<<<..<<..............
.>>..>>>>>>>>>..>>.>.....>>>>>>..<<<<<<.........>>
>>>>..>>>>>>>..>>..<<<<<<<<<<......>>>>>>>>>>....<
<<......>>>...<<<<.<<<...<<<(((.....<<<<<<........
...<<..<<<<<<<<<<.........<<<.<<....<<.........>>.
...>>.........<<......>>...>>>.....>>>>>>>>>>.>>..
........))).....>>>>>>.>>>...>>>>>>><<<<<......>>>
>>....>>>>>><.<<<<<<...........<<<<<.<<....>>>>>>>
........>>>>>>..>.....>>>>>><......<<.....<<<<<<..
.....>>>>>><<<<....<<<<<.<<...<<<<<<...<<.....>>.>
>>>>>....((<<<<.<<...<<<...<<<....>>>...>>>...>>..
.<<<<<........>>>>>))<<<<<..<<<.<....<<<<....<<<<.
.<<<..<<<<<<<<<<.....[[[..>>>>><...<<<<<...<......
............<<<............>>>.....>..>>>>>....><.
.<<<<<....>>>>>...>>>>>>...>>>...>>>>.........>>>>
.....>....>.>>...>>>>>>>>>..>>.....<<......>>>>>>>
.<<<<.....>>>>..>>>>..<<<<....<<<<<<<<.<<.........
<.....<<<<<...............>>>>><<<<<<.......>>>>>>
............<<<<<<<<<..<<<.........>>>..<<<<<<<...
..<<<....>>>.......>>>>>>>.<<<<<.<<<..<<<<<<<..<<<
...<<..<<<<<<..<<<......>>>...>>>>>>..>>...>>>>>>>
>..>>>>><<<<<<.......>>>>>>........<...........<<<
<<<.....>>>>>>.....>....>>>>>..>>.>>>>>>>..>..>>.>
>>>>>>>.>>>>>>.....>.....<<<<<........>>>>>..<<<<<
<<<.<<<..<......<<<<.<<<<<<..<<<<<..<<<<<<<..<<.<<
<.<<<.<<<<<...........<<<<<...<<......<<<<<<<<....
>>>>>>>>...>>.............>>>.>>.>>>>>.>>>.>>>.>>.
..<<<<<.<<<..........>>>>>>>>.....>>>>>>>...>>>>>.
.<<<<.....>>>><<<<<<...........>>>>>>..<<...<<<<<<
<..<<<<<<.........>>>>>>....<<...(((>>....>>>>>>>.
..<<<<..<<<......>>>..>>>>.<<<....>>>.>>))).......
<<<<<<<.<<..))))..>>>>>>>>>.............>>>>..>>>>
>>.......<<<<...<<<<<<...<<.......>>...>>>>>>....>
>>.>.......<<<<<.<.<<<<..<<<<<<<<........>>>>>..>>
>.<<<<<.....>>>>>.....>>>>...>...>>>.>>....<<<<<<<
....>>>.>>>>....>...>>>>>>>>>>>....<<<<<<<...<.<<.
.<<<<<<<...............>>>>>>>.<<<<<...<<<<...<<<<
<<<<<<<]]].>>>>>>...>>>>>...>>>>.>>>>>....<<...<<<
<<<...........>>>>>>...>>..>>.>.......>>>>>>>....
Receptor-Ligand Complex Structure
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PDB5h1s Cryo-EM structure of the large subunit of the spinach chloroplast ribosome.
Resolution3.5 Å
Binding residue
(original residue number in PDB)
R69 R94 F100 P102 S103 K110 A113 R114 L116 T117 R120 K130 R131 R134
Binding residue
(residue number reindexed from 1)
R7 R32 F38 P40 S41 K48 A51 R52 L54 T55 R58 K68 R69 R72
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:5h1s, PDBe:5h1s, PDBj:5h1s
PDBsum5h1s
PubMed27762343
UniProtP82248|RK29_SPIOL Large ribosomal subunit protein uL29c (Gene Name=RPL29)

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