Structure of PDB 5mre Chain YY Binding Site BS01

Receptor Information
>5mre Chain YY (length=269) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SADLYMHPEKWKGLPPQRILELYWERMARLGSEYKPNKDELNALLTTSEY
SNVPVNDIKKLYHRGEQGAIDIKNRDNSLRPFMFDELPSQAQELVAQHRE
QRFYNRLAAYELPLLAQYRQEYKRPSPESHPVTYRYTSYVGEEHPNSRKV
VLSVKTKELGLEEKSLHKFRILARSRYDHTTDIFKMSSDKFEHASQNARY
LHDILQRLLAESKDLTEDDFSDVPLDTRHTIAKSLRKKKRDYEFPEHWKR
PEDAPKKKFDIVDQLLSTL
Ligand information
>5mre Chain aa (length=1501) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uaagaauaugauguugguucagauuaagcgcuaaauaaggacaugacaca
ugcgaaucauacguuuauuauugagauaauaaauaugugguguaaacgug
aguaauuuuauuaggaauuaaugaacuauagaauaagcuaaauacuuaau
auuauauaaaaaauuuauauaauaaaaaggauauauauauauauauuuau
cuauagucaagccaauaaugguuuagguaguagguuuauuaagaguuaaa
ccuagccaacgauccauaaucgauaaugaaaguuagaacgaucacguuga
cucugaaauauagucaauaucuauaagauacagcagugaggaauauugga
caaugaucgaaagauugauccaguuacuuauuaggaugauauauauauau
auauaaauugauuaaaaauaaaauccauaaauaauuaaaauaaugauauu
aauuaccauauauuuauauggauauauauauauuuuaauaguccugacua
auauuugugccagcagucgcgguaacacaaagagggcgagcguuaaucau
aaugguuuaaaggauccguagaaugaauuauauauaauuuagaguuaaua
aaauuaauuaaagaauuauaauaguaaagaugaaauaauaauaauaauua
uaagacuaauauaugugaaaauauuaauuaaauauuaacugacauugagg
gauuaaaacuagaguagcgaaacggauucgauacccguguaguucuagua
guaaacuaugaauacaauuauuuauaauauauauauaaauaauaaaugaa
aaugaaaguauuccaccugaagaguacguuagcaauaaugaaacucaaaa
caauagacgguuacagacuuaagcaguggagcauguuauuuaauucgaua
auccacgacuaaccuuaccauauuuugaauauuauaauaauuauaauuau
uauauuacaggcguuacauuguugucuuuaguucgugcugcaaaguuuua
gauuaaguucauaaacgaacaaaacuccauauauauaauuuuaauuauau
auaauuuuauauuauuuaauauaaagaaaggaauuaagacaaaucauaau
gauccuuauaauauggguaauagacgugcuauaauaaaaugauaauaaaa
uuauauaaaauauauuuaauuauauuuaauuaauaauauaaaacauuuua
auuuuuaauauauuuuuuuauuauaaauaugaauuauaaucugaaauucg
auuauaugaaaaaagaauugcuaguaauacguaaauuaguauguuacggu
gaauauucuaacuguuucgcacuaaucacucaucacgcguugaaacauau
uauuaucuuauuauuuauauaauauuuuuuaauaaauauuauuaauuuau
auuuauuuauaucagaaauaauaugaauuaaugcgaaguugaaauacagu
uaccguaggggaaccugcggugggcuuauaaauaucuuaaauauucuuac
a
...<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<......<<<.
<<<..<<<..<<<<<<<<<<<<..>>>>>>>>>>..>>>>>.....<<<.
.......<<<<<.<<.........<<<<<<<<.<<<<.......>>>>..
.<<<<<<<<<...>>>>>>>>>......<<<<<<<<<..>>>>>>>>>.>
>>>>>>>....>>>>>>><<<....<<<..<<<<<<<<........>>>>
>>>>>>>......>>>..<<<<.<<<<....>>>>...>>>>.>>><<<<
<<.........>>>>>><<<<.....>>>>..>>>>>>.........<<<
....<<<<....>>>>..>>>...>.>>>>>>.<<<<..<<<<<<....>
>>>>>..<<......>>.....>>>>..<<<<<<<<..............
>>>>><<<<<<<..>>>>>>><<<<<..>>>>>>>>....<<<<<(((..
...<<<<.....<<.)))>>.......>>>>.>>>>>..>>>>>>>>>..
...<<<((.....<<<<...<.<<.<<<<<<..>>>>>>...<<<<<<<<
...<<<<<<<<<<..<<<<<<<........................>>>>
>>>..>>.......<<....>>.>>>>>>>>.>>>>>>>>...>>>...>
>>>....<<<<<<...<<...<<<<.........>>>>...>>>>>>>>.
.........<<<<<<.<<<<<<<<<<.<..>..>>>>>>>>>>..<<..)
)>>....>>>>>>.>>>.<<.......<<<<....>>>>.....>>..))
)).]<<.<<...<<<<.....<<<<<<..<<<<<<<<<<......<<...
.....>>..........<<<<<<<.....<<.<<<<<<<<<<..>>>>>>
>>>>.>>.<<<.<<<..<<<<<<<<<....<<<<<<<<<....>>>....
<<......>>....>>>>>>.....<<<.<<<<<<<<........>>>>>
>>>..<<<<<<<<<..>>>>>>>>>....>>>.....>>>.>>>...>>>
>>>>>>...>>>>>>>...>>.>>>>>>>>.....<<<<<<........<
<<..<<..<<<<<<......>>>>>>..>>....>>>......>>>>>>.
.....<<<<<........>>>>>......<....<<<<<<<........>
>>>>>>....>.....>>>>>>....<<.<<<<<.........>>>>>>>
...........>>>>..>>..>>....<.<<<.<.<<<<<<<<..<<<<<
<<<<.<<<...<<<..<<<.<<<<<...<<<<<<<...>>>>>>>...>>
>>>>>>..>>>..>>>>>>>>>>>>..>>>>>>>>..>.>>>..>.....
<<<<<<<<<....>>>>>>>>>............................
.
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5mre The structure of the yeast mitochondrial ribosome.
Resolution3.75 Å
Binding residue
(original residue number in PDB)		R185 P195 N196 K199 S225 R226 K235 M236 S237 D239 R278 L285 R286 K287 R290 Y292
Binding residue
(residue number reindexed from 1)		R135 P145 N146 K149 S175 R176 K185 M186 S187 D189 R228 L235 R236 K237 R240 Y242
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0032543 mitochondrial translation

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:5mre, PDBe:5mre, PDBj:5mre
PDBsum5mre
PubMed28154081
UniProtQ03976|RT24_YEAST Small ribosomal subunit protein mS35 (Gene Name=RSM24)

[Back to BioLiP]