Structure of PDB 8c9c Chain Y Binding Site BS01

Receptor Information
>8c9c Chain Y (length=63) Species: 562 (Escherichia coli) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDV
ARVKTLLNEKAGA
Ligand information
>8c9c Chain A (length=513) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
agcguacacgguggaugcccuggcagucagaggcgaugaaggacgugcua
aucugcgauaagcgucgguaaggugauaugaaccguuauaaccggcgauu
uccgaauggggaaacccaguguguuucgacacacuaucauuaacugaauc
cauagguuaaugaggcgaaccgggggaacugaaacaucuaaguaccccga
ggaaaagaaaucaaccgagauucccccaguagcggcgagcgaacggggag
cagcccagagccugaaucaguguguguguuaguggaagcgucuggaaagg
cgcgcgauacagggugacagccccguacacaaaaaugcacaugcugugag
cucgaugaguagggcgggacacgugguauccugucugaauauggggggac
cauccuccaaggcuaaauacuccugacugaccgauagugaaccaguaccg
ugagggaaaggcgaaaagaaccccggcgaggggagugaaaaagaaccuga
aaccguguacgua
..<<<<<<<<<<....<<<..<<<<<<<<<<<<<......<<<<<<.[..
(((.>>>.....<<<<<<<..<<<)))..].>>>......>>>>>>>...
>>>....<<<....>>><<<<<<<....>>>>>>>.<<<<<<<<<.....
....>>>>>>>>>.>>...<<<<<<.....<......>......>>>>>.
>....................<<<<<.....<<.....>>....>>>>>.
..<<...<<<<......<<<<<<<<<<<<<.<<<...<<<<<......>>
>>>((......<<<.....))>>>...>>>...>>>>>>>>>>>>>...>
>>>........<.<.<<<<.........>>>>.>.>......<<.<<...
...>>.>>...>>......>>.>>>>>>>.>>...............<<.
...>>....>>.........<<<<.....>>>>.............>...
.>>>>>>>>>>..
Receptor-Ligand Complex Structure
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PDB8c9c Cryo-EM captures early ribosome assembly in action.
Resolution6.62 Å
Binding residue
(original residue number in PDB)		K2 Q38 Q39 H41 K44 R48 R52 K54 T55
Binding residue
(residue number reindexed from 1)		K2 Q38 Q39 H41 K44 R48 R52 K54 T55
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0000027 ribosomal large subunit assembly
GO:0002181 cytoplasmic translation
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8c9c, PDBe:8c9c, PDBj:8c9c
PDBsum8c9c
PubMed36797249
UniProtP0A7M6|RL29_ECOLI Large ribosomal subunit protein uL29 (Gene Name=rpmC)

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