Structure of PDB 6swe Chain Y Binding Site BS01

Receptor Information
>6swe Chain Y (length=50) Species: 272844 (Pyrococcus abyssi GE5) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MGQKWKLYIVKDGKVIRKNKFCPRCGPGVFMADHGDRWACGRCGYTEWKK
Ligand information
>6swe Chain 2 (length=468) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
guaaggcgggggagcacuacaagggguggagcgugcgguuuaauuggauu
caacgccgggaaccucaccgggggcgacggcaggaugaaggccaggcuga
aggucuugccggacgcgccgagaggaggugcauggccgccgucagcucgg
cguccacuuaagugugguaacgagcgagacccgcgcccccaguugccagu
cccucccgcucgggagggaggcacucuggggggacugccggcgauaagcc
ggaggaaggggcgggcgacgguaggucaguaugccccgaaacccccgggc
uacacgcgcgcuacaaugggcgggacaaugggugccgaccccgaaagggg
gagguaauccccuaaacccgcccucaguucggaucgcgggcugcaacucg
cccgcgugaagcuggaaucccuaguacccgcgcgucaucaucgcgcggcg
aauacgucccugcuccuu
.........<<<<<<<..<<.<<<<<<..<<<<<<<<<<......<<...
.....>>..........<<<<<<<...<<<<........<<<.<<<....
...>>>.>>>......>>>>...<<.<<<..<<<<<<<<.....<<<<..
...<<<<......>>>>....>>>>....<<<<<.<<<<<<<..<<...<
<<<<<<<....>>>>>>>>.>>...>>>>>>>.....<<<<<.....>>>
>>........>>>>>.....>>.>>>...>>>>>>>>....>>>>>>>..
.>>.>>>>>>>>.....<<<<<<<.....<<<..<<..<<<<....>>>>
..>>....>>>.....>>>>>>>......<....<<<<<<<........>
>>>>>>....>.....>>>>>>.....<<<<<<<.......>>>>>>>..
.....>>...>>>>>>>.
Receptor-Ligand Complex Structure
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PDB6swe Cryo-EM study of an archaeal 30S initiation complex gives insights into evolution of translation initiation.
Resolution3.1 Å
Binding residue
(original residue number in PDB)		M1 G2 Q3 V29 F30 M31 A32 D33 H34 R37 G41 T46
Binding residue
(residue number reindexed from 1)		M1 G2 Q3 V29 F30 M31 A32 D33 H34 R37 G41 T46
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0008270 zinc ion binding
GO:0046872 metal ion binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6swe, PDBe:6swe, PDBj:6swe
PDBsum6swe
PubMed32029867
UniProtP61238|RS27A_PYRAB Small ribosomal subunit protein eS31 (Gene Name=rps27ae)

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