Structure of PDB 5w7g Chain Y Binding Site BS01

Receptor Information

>5w7g Chain Y (length=131) Species: 235266 (Captovirus AFV1) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

RKLRQDSTDRYKTKLYLWRNLGGLIPEDMAISVTESITADWKQYNDMMSK
VRNETLDILKTNKVATEDYIGYIAFAEELAHQVWKNKNSSPDPNTANEAS
KTDLESKYSDVYGLDVTVLDAIYNAVIPIIM

Ligand information

>5w7g Chain q (length=252) [Search DNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

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Receptor-Ligand Complex Structure

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Structure summary

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PDB	5w7g Model for a novel membrane envelope in a filamentous hyperthermophilic virus.
Resolution	4.5 Å
Binding residue (original residue number in PDB)	R15 Y16 W23 R24 S41 D45 Q48 Y49 I75 E82 H86
Binding residue (residue number reindexed from 1)	R10 Y11 W18 R19 S36 D40 Q43 Y44 I70 E77 H81

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0003677	DNA binding

	Cellular Component
GO:0019029	helical viral capsid
GO:0044423	virion component

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Molecular Function

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Cellular Component

External links

PDB	RCSB:5w7g, PDBe:5w7g, PDBj:5w7g
PDBsum	5w7g
PubMed	28639939
UniProt	Q70LC6\|CAPS1_AFV1Y Major capsid protein 1 (Gene Name=ORF140)

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