Structure of PDB 3j46 Chain Y Binding Site BS01

Receptor Information
>3j46 Chain Y (length=63) Species: 562 (Escherichia coli) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDV
ARVKTLLNEKAGA
Ligand information
>3j46 Chain 1 (length=63) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
aaggacgugcuaaucugcgauaagcgucgguaaggugauaugaaccguua
uaaccggcgauuu
.....<<<....(((.>>>.....<<<<<<<..<<<)))....>>>....
..>>>>>>>....
Receptor-Ligand Complex Structure
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PDB3j46 Structure of the SecY channel during initiation of protein translocation.
Resolution10.1 Å
Binding residue
(original residue number in PDB)		M1 K2 E5 S40 H41 L43 K44 R47 R48 A51 R52 K54 T55 N58 E59
Binding residue
(residue number reindexed from 1)		M1 K2 E5 S40 H41 L43 K44 R47 R48 A51 R52 K54 T55 N58 E59
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0000027 ribosomal large subunit assembly
GO:0002181 cytoplasmic translation
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Cellular Component
External links
PDB RCSB:3j46, PDBe:3j46, PDBj:3j46
PDBsum3j46
PubMed24153188
UniProtP0A7M6|RL29_ECOLI Large ribosomal subunit protein uL29 (Gene Name=rpmC)

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