Structure of PDB 2jes Chain Y Binding Site BS01

Receptor Information

>2jes Chain Y (length=370) Species: 10724 (Bacillus phage SPP1) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

PDTTMIQKLIDEHNPEPLLKGVRYYMCENDIEKKRRTYYDAAGQQLVDDT
KTNNRTSHAWHKLFVDQKTQYLVGEPVTFTSDNKTLLEYVNELADDDFDD
ILNETVKNMSNKGIEYWHPFVDEEGEFDYVIFPAEEMIVVYWGRVPIIPF
KNNEEMVSDLKFYKDLIDNYDSITSSTMDSFSDFQQIVYVLKNYDGENPK
EFTANLRYHSVIKVSGDGGVDTLRAEIPVDSAAKELERIQDELYKSAQAV
DNSPETIGGGATGPALEKLYALLDLKANMAERKIRAGLRLFFWFFAEYLR
NTGKGDFNPDKELTMTFTRTRIQNDSEIVQSLVQGVTGGIMSKETAVARN
PFVQDPEEELARIEEEMNQY

Ligand information

Ligand ID

InChI

InChI=1S/Ca/q+2

InChIKey

BHPQYMZQTOCNFJ-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Ca++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Ca+2]

Formula

Name

CALCIUM ION

PDB chain

2jes Chain Y Residue 801 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	2jes Structural Framework for DNA Translocation Via the Viral Portal Protein
Resolution	3.4 Å
Binding residue (original residue number in PDB)	E60 R83
Binding residue (residue number reindexed from 1)	E32 R55
Annotation score	4

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Biological Process
GO:0046718	symbiont entry into host cell
GO:0098006	viral DNA genome packaging, headful
GO:0099001	symbiont genome ejection through host cell envelope, long flexible tail mechanism

	Cellular Component
GO:0019028	viral capsid
GO:0046729	viral procapsid
GO:0046798	viral portal complex

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Biological Process

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Cellular Component

External links

PDB	RCSB:2jes, PDBe:2jes, PDBj:2jes
PDBsum	2jes
PubMed	17363899
UniProt	P54309\|PORTL_BPSPP Portal protein (Gene Name=6)

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