Structure of PDB 6zsd Chain XI Binding Site BS01

Receptor Information
>6zsd Chain XI (length=211) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SKAVTRHRRVMHFQRQKLMAVTEYIPPKPAIHPSCLPSPPSPPQEEIGLI
RLLRREIAAVFQDNRMIAVCQNVALSAEDKLLMRHQLRKHKILMKVFPNQ
VLKPFLEDSKYQNLLPLFVGHNMLLVSEEPKVKEMVRILRTVPFLPLLGG
CIDDTILSRQGFINYSKLPSLPLVQGELVGGLTCLTAQTHSLLQHQPLQL
TTLLDQYIREQ
Ligand information
>6zsd Chain XA (length=1499) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
gcuaaaccuagccccaaacccacuccaccuuacuaccagacaaccuuagc
caaaccauuuacccaaauaaaguauaggcgauagaaauugaaaccuggcg
caauagauauaguaccgcaagggaaagaugaaaaauuauaaccaagcaua
auauagcaaggacuaaccccuauaccuucugcauaaugaauuaacuagaa
auaacuuugcaaggagagccaaagcuaagacccccgaaaccagacgagcu
accuaagaacagcuaaaagagcacacccgucuauguagcaaaauaguggg
aagauuuauagguagaggcgacaaaccuaccgagccuggugauagcuggu
uguccaagauagaaucuuaguucaacuuuaaauuugcccacagaacccaa
auccccuuguaaauuuaacuguuaguccaaagaggaacagcucuuuggac
acuaggaaaaaaccuuguagagagaguaaaaaauuuaacacccauaguag
gccuaaaagcagccaccaauuaagaaagcguucaagcucaacaccaaaaa
ucccaaacauauaacugaacuccucacacccaauuggaccaaucuaucac
ccuauagaagaacuaauguuaguauaaguaacaugaaaacauucuccucc
gcauaagccugcgucagauaacaacugacaauuaacagcccaauaucuac
aaucaaccaacaagucauuauuacccucacugucaacccaacacaggcau
gcucauaaggaaagguuaaaaaaaguaaaaggaacucggcaaaucuuacc
ccgccuguuuaccaaaaacaucaccucuagcaucaccaguauuagaggca
ccgccugcccagugacacauguuuaacggccgcgguacccuaaccgugca
aagguagcauaaucacuuguuccuuaaauagggaccuguaugaauggcuc
cacgaggguucagcugucucuuacuuuuaaccagugaaauugaccugccc
gugaagaggcgggcauaacacagcaagacgagaagacccuauggagcuuu
aauuuauuaaugcaaacaguaaccaaaccugcauuaaaaauuucgguugg
ggcgaccucggagcagaacccaaccuccgagcaguacaugcuaagacuuc
accagucaaagcgaaccucaauugauccaauaacuugaccaacggaacaa
guuacccuagggauaacagcgcaauccuauucuagaguccauaucaacaa
uaggguuuacgaccucgauguuggaucaggacaucccgauggugcagccg
cuauuaaagguucguuuguucaacgauuaaaguccuacgugaucugaguu
cagaccggaguaauccaggucgguuucuaucuacuuauuccucccuguac
gaaaggacaagagaaauaaggccuacuucacaaagcgccuucccccguaa
augauaucaucucaacuuagaauacccacacccacccaagaacaggguu
<<<.......<<<<....................................
.<......>.........<.....<<.....>>....>........>>.>
>.............<<....>>......................>>>...
........<<<.......>>>...<.<........>.>.<<<<<<.....
....<<<.<<..<<....>>...>>.>>>...<<.<...<<<<.<.....
<<<<<.<<<..<<<.....>>>...<<<..<<<<........>>>>.>>>
....>>>.>>>>>...<<.......>>......>.>>>>......>.>>.
.<<<<<<....<<<<....>>>><<<.<<<<<<<<<<.....<<......
.>>.....>>>>>>>>>>..>>>.<<<<<<<<<<......>>>>>>>>>>
.<.<<<......>>>.>..<<<.<<<...<..............<....<
<<.........>>>....>.......<<<......>>>............
...............>...>>>>>>........>>>>>>...<<<<<...
...>>>>>.........>>>>>><......<<..<<<....>>><<<<..
<<<<........<<<<<.......>>>>>......<<<...<<<<.....
..................>>>>.......>>>.....<<......>>.>>
>>.....>>>>..<<<<...<<<<<<<<.<<.........<......<<<
<<<..<<<.........>>>...<<<<<<.............>>>>>>..
..<<<.<<<..<<<<<....>>>..>>>>><<<<<<......>>>>>>..
......<...........<<<<<<.....>>>>>>.....>....>>>..
..>>.>>>>.....>..>>.>>>>>>>>>>>>.>>.....>.....<<<<
<........>>>>>.......<<..<<<.<<......<<<<.<<<<<<..
<<<<<.<<<<<<<<...............>>>>>>>>>>>>>..<<<<..
...>>>><<<<<<...........>>>>>>..<<.....<<<..<<<<..
...>>>>..>>>....>>.........<<<....>>>............>
>>>..>>>>>>.......<<<..<.<<<<<<...<<.......>>...>>
>>>>...>.>>.>.......<<<<<.<<<<<<..<<.<<<<<<......>
>>>>>...>>.<<<<<.....>>>>>.....>>>>>..>...>>>.>>..
..<<<<<<<....>>>.>>>>....>>..>>>.>>.<<<.<<<......<
....>.....>>>.>>><<<<<...<<<....>>>.>>>>>......<<<
................>>>..............<<<<.......>>>>.
Receptor-Ligand Complex Structure
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PDB6zsd Structural basis of mitochondrial translation.
Resolution3.7 Å
Binding residue
(original residue number in PDB)		K31 V33 R35 R38 H41 F42 Q43 K46 A106 K124 V125 P127 N128 G149 H150
Binding residue
(residue number reindexed from 1)		K2 V4 R6 R9 H12 F13 Q14 K17 A77 K95 V96 P98 N99 G120 H121
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0005515 protein binding
Biological Process
GO:0006412 translation
GO:0032543 mitochondrial translation
Cellular Component
GO:0005654 nucleoplasm
GO:0005739 mitochondrion
GO:0005743 mitochondrial inner membrane
GO:0005762 mitochondrial large ribosomal subunit
GO:0005840 ribosome
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6zsd, PDBe:6zsd, PDBj:6zsd
PDBsum6zsd
PubMed32812867
UniProtQ7Z7H8|RM10_HUMAN Large ribosomal subunit protein uL10m (Gene Name=MRPL10)

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