Structure of PDB 8v9l Chain X Binding Site BS01

Receptor Information
>8v9l Chain X (length=192) Species: 246196 (Mycolicibacterium smegmatis MC2 155) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TANIPNKLTANVRTRTGKGASRQARRDGKVPAVLYGHGTDPQHLELNARD
FAAVLRSHGTNAILTLDIEGTEQLALTKALDVHPIRRNIQHADLLVVQRG
EKVTVEVTVLVEGDATPGTLVTQDANTIEIEAEALSIPEQLTVSVEGVEA
GTQITAGQISLPEGVNLISDPELLVVNVVEAPSAEALEEEGA
Ligand information
>8v9l Chain A (length=3073) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
aaguguuuaagggcgcaugguggaugccuuggcacugggagccgaugaag
gacguaggaggcugcgauaagccucggggagcugucaaccgagcguugau
ccgaggauguccgaauggggaaacccggcacgagugaugucgugucacca
ggcgcugaauauauaggcgucuggggggaacgcggggaagugaaacaucu
caguacccguaggaagagaaaacaaaaugugauuccgugaguaguggcga
gcgaaagcggaggauggcuaaaccguaugcaugugauaccggguaggggu
ugugugugcgggguugugggaccuaucuuuccggcucuaccuggcuggag
ggcagugagaaaauguugugguuagcggaaauggcuugggauggccugcc
guagacggugagagcccgguacgugaaaacccgacgucugucuugauggu
guucccgaguagcagcgggcccguggaaucugcugugaaucugccgggac
cacccgguaagccugaauacuucccagugaccgauagcggauuaguaccg
ugagggaauggugaaaaguaccccgggaggggagugaaagaguaccugaa
accgugcgcuuacaauccgucagagcccucgacgugucguggggugaugg
cgugccuuuugaagaaugagccugcgagucagggacaugucgcgagguua
acccgggugggguagccgcagcgaaagcgagucugaauagggcguaucca
cacaagagugugugguguagugguguguucuggacccgaagcggagugau
cuacccauggccagggugaagcgcggguaagaccgcguggaggcccgaac
ccacuuagguugaagacugaggggaugagcuguggguaggggugaaaggc
caaucaaacuccgugauagcugguucuccccgaaaugcauuuaggugcag
cgucgcauguuucuugccggagguagagcuacuggauggccgaugggccc
cacaggguuacugacgucagccaaacuccgaaugccgguaaguccaagag
ugcggcagugggacggcgggggauaagcuccgugcgucgagagggaaaca
gcccagaucgccggcuaaggccccuaagcgugugcuaaguggaaaaggau
gugcagucgcgaagacaaccaggagguuggcuuagaagcagccacccuug
aaagagugcguaauagcucacuggucaagugauugugcgccgauaaugua
gcggggcucaagcacaccgccgaagccgcggcagccaacguguuggcugg
guaggggagcguccugcauccggugaagccgccgagugaucgaguggugg
agggugugggagugagaaugcaggcaugaguagcgauuaggcaagugaga
accuugcccgccgaaagaccaaggguuccugggccaggccaguccgccca
gggugagucgggaccuaaggcgaggccgacaggcguagucgauggacaac
ggguugauauucccguacccguguaugugcguccaugaugaaucagcggu
acuaaccauccgcaugggaccuucguugguaguagucaagcgauggggug
acgcaggaagguagccguaccggucagugguaauaccgggguaagccugu
agggagucagauagguaaauccgucuggcauauauccugagaggugaugc
auagccgagugaggcgaauucggugauccuaugcugccgagaaaagccuc
uagcgaggacauacacggcccguaccccaaaccaacacagguggucaggu
agagaauacuaaggcguacgagugaacuaugguuaaggaacucggcaaaa
ugcccccguaacuucgggagaagggggacccacauggcguguaagccuuu
acggcccaagcgugaguggguggcacaaaccagugagaagcgacuguuua
cuaaaaacacagguccgugcgaagucgcaagacgauguauacggacugac
gccugcccggugcuggaagguuaagaggacccguuaacucccuuuggggg
ugaagcggagaauuuaagccccaguaaacggcggugguaacuauaaccau
ccuaagguagcgaaauuccuugucggguaaguuccgaccugcacgaaugg
cguaacgacuucucaacugucucaaccauagacucggcgaaauugcacua
cgaguaaagaugcucguuacgcgcggcaggacgaaaagaccccgggaccu
ucacuacaacuugguauuggugcucgauacgguuuguguaggauaggugg
gagacugugaagcucacacgccaguguggguggagucguuguugaaauac
cacucugaucguauugggccucuaaccucggaccguauauccgguucagg
gacagugccugguggguaguuuaacuggggcgguugccuccuaaaaugua
acggaggcgcccaaagguucccucaaccuggacggcaaucagguguugag
uguaagugcacaagggagcuugacugcgagacggacaugucgagcaggga
cgaaagucgggacuagugauccggcaccucugaguggaaggggugucgcu
caacggauaaaagguaccccggggauaacaggcugaucuuccccaagagu
ccauaucgacgggaugguuuggcaccucgaugucggcucgucgcauccug
gggcuggagcaggucccaaggguugggcuguucgcccauuaaagcggcac
gcgagcuggguuuagaacgucgugagacaguucggucucuauccgccgcg
cgcgucagaagcuugaggaaaccugucccuaguacgagaggaccgggacg
gacgaaccucugguauaccaguugucccaccaggggcacggcuggauagc
cacguucggacaggauaaccgcugaaagcaucuaagcgggaaaccucuuc
caagaccaggcuucucacccucuaggagggauaaggccccccgcagacca
cgggauugauagaccagaccuggaagccuaguaauaggugcagggaacug
gcacuaaccggccgaaaacuuac
<<<<......<<<<<<<<<<<.....<<..<<<<<<<<<<<<<......<
<<<<<.[[.(((.>>>.....<<<<<<<..<<<)))..]].>>>.....>
>>>>>>...>>>....<<<....>>><<<<<<<......>>>>>>>.<<<
<<<<<<.........>>>>>>>>>.>>...<<<<<<.....<<....>>.
.....>>>>>.>.........<<.....>>..<<<<<<.....<<.....
>>....>>>>>>...<<<....<<<<<<<<<<......<..<<<<<.>..
.>>>>>>>>>>......<<<<..[.....<<<<<<<>>>>>.>>>>>>><
<<<<<.......<<<<<<.<<<<.<<<.....<<<<......>>>>.((.
.....<<<.....))>>>...>>>...>>>>>>>>>>>>>>>>.....].
..>>>>.....<<<<<<<<.........>>>>>>>>......<<<<<..<
<<<>>>>>..>>>......>>.>>>>>>>.>>...............<<.
...>>....>>.........<<<<....>>>>..................
>>>>>>>>>>>.......<<<<..<<<<<<<<<..>>>>.>>>>>..>>>
>...<.<........>.>.<<<<<<....<<<.<<<<<<<<<<..<<<..
.<<<....>>>...>>>...<<....>>..<<<<.....>>>>....<<<
<<<<....>>>>>>>....>>>>>>>>>>>>>..<<.<..<<<<<<<...
..<<<<<<<<<..<<<....<<<<<<......>>>>>>.....>>>...<
<<.<<<<<........>>>>>>>>....>>>>>>>>>...<<<.....>>
>......>>>>>>...>..>.>>..<<<<<<....<<<<<....>>>>><
<<<<<<<<....<<<<<<<<.....<<<....<<<.<<<<....<<<<<.
.....>>>>.>....>>>>.>>>..>>.>.....>>>>>>>>.......>
>>>>>>.>>..<<<<<<<<<<......>>>>>>.>>>>....<<<.....
.>>>...<<<<.<<<...<<<(((.....<<<<<<...........<<..
<<<<<<<<<........<<<<<.<<<..<<<<.......>>>>..>>>..
.......<<......>>...>>>>>....>>>>>>>>>.>>.........
..)))......>>>>>>.>>>...>>>>>>><<<<<<<<..>>>>>>>>.
...>>>>>><.<<<<<<<<<<......<<<<<<<<....>>>.>>>>>..
.>>>>>>>>>>..>.....>>>>>><......<<.....<<<<<<.....
..>>>>>><<<<....<<<<<.<<...<<<<<<...<<.....>>.>>>>
>>....((<<<<.<<...<<<...<<<....>>>...>>>...>>...<<
<<<........>>>>>))<<<<<<<<<<.......<<<<..<<<<<<<<.
..<..<<<<....>>>>.>...>>>>>>>>....>>>>.<<...<<<<<.
..<<<<..<<<..<<<<..<<<<<...((((...>>>>>.<<..<<<<..
.<<<<<<<<<<<.<<.....>>>>>>>>>.....>>>>...>>>>...>>
...<<<......>>>.....>>>>...>>>...>>>>........>>>>>
..>>....>>>>>>>>>>>>>>..>>.....<<......>>>>>>>.<<<
<.....>>>>..>>>>..<<<<<...<<<<<<<<.<<.........<...
..<<<<<....<<..>>.....>>>>><<<<<<...<<<<....<<<...
..>>>....>>>>..>>>>>>............<<<<<<<<<..<<<...
......>>>..<<<<<<<.....<<<....>>>.......>>>>>>>.<<
<<<.<<<..<<<<<<<..<<<<.<<<....<<<<<.<<<<<<...>>>>>
>..>>>>>....>>>.>>>>>>>>>..>>>>><<<<<<.......>>>>>
>........<...........<<<<<<.....>>>>>>.....>....>>
>>>..>>.>>>>>>>..>..>>.>>>>>>>>>>>>>>>.....>.((..<
<<<<......))>>>>>..<<<<<<<<.<<<.<<......<<<<<<<<<<
..<<<<<.<<<.<<<<<.<<.<<<<<<<<<<<<<...........<<<<<
...........<<<<<<<<....>>>>>>>>..................>
>>>>..>>>>>>>>>>>>>.>>...<<<.<<<<<<......>>>>>>>>>
....>>>>>.>>>..>>>>>..<<<<.....>>>><<<<<<.........
..>>>>>>..<<...<<<<<<<...<<<<<<.......>>>>>>.....<
<.[.(((>>....>>>>>>>...<<<<..<<<<....>>>>..>>>>.<<
<....>>>.>>)))]......<<<<<<<.<<..>>>>..>>>>>>>>>..
...........>>>>..>>>>>>.......<<<<.<.<.<<<<...<<..
.....>>...>>>>.>...>>>>.>.......<<<<<.<<<<<<..<<<<
<<<<<......>>>>>>..>>>.<<<<<.....>>>>>.....>>>>>..
>...>>>.>>....<<<<<<<....>>>.>>>>....>>..>>>>>>>>>
>>....<<<<<<<...<<<<..<<<<<<<...............>>>>>>
>.<<<<<...<<<<...<<<<<<<<<<<))))>>>>>>..>>>>>...>>
>>.>>>>>...<<<.<..<<<<<...........>>>>>...>>>>.>>>
>.......>>>>>>>..<<<<<...>>>>>....<<<<.<<<<.......
>>>>.....<<<.<<<<.<<<....<<<<<....>>>>>...>>>..>>>
>..>>>...>>>>....>>>>..
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8v9l A new family of bacterial ribosome hibernation factors
Resolution3.0 Å
Binding residue
(original residue number in PDB)		R52 L177
Binding residue
(residue number reindexed from 1)		R49 L174
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0008097 5S rRNA binding
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8v9l, PDBe:8v9l, PDBj:8v9l
PDBsum8v9l
PubMed38355796
UniProtA0R3D2

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