Structure of PDB 8p0t Chain X Binding Site BS01

Receptor Information
>8p0t Chain X (length=204) Species: 412133 (Trichomonas vaginalis G3) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DISTYNGSCVLAMAGDHCVAIASDRRLGVNMLTVSKDFKRIFQINDRIYL
GLAGLATDVLTVREQLRFDVNLLELREERPIDPKKFMNLVKSTLYEKRFS
PFFVTPVIAGLLPETNEPYLAASDSIGAFAFPKDFAVAGTCEESLYGICE
SAWRPNMNPDELFECTAKCLIAAVERDSISGWGGIVYIITQDKVIIKEIK
TRMD
Ligand information
Ligand IDX5C
InChIInChI=1S/C45H56N6O6/c1-5-6-8-21-41(54)48-37(23-31-25-46-35-19-13-11-17-33(31)35)42(55)49-38(24-32-26-47-36-20-14-12-18-34(32)36)43(56)50-40(22-30-15-9-7-10-16-30)45(4)44(3,28-53)51-39(27-52)29(2)57-45/h7,9-20,25-27,29,37-40,46-47,51,53H,5-6,8,21-24,28H2,1-4H3,(H,48,54)(H,49,55)(H,50,56)/t29-,37+,38+,39-,40+,44-,45+/m1/s1
InChIKeyCAPIPKYPZCWPIP-WTXFIQMLSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7CCCCCC(=O)N[C@@H](Cc1c[nH]c2c1cccc2)C(=O)N[C@@H](Cc3c[nH]c4c3cccc4)C(=O)N[C@@H](Cc5ccccc5)[C@]6([C@@](N[C@@H]([C@H](O6)C)C=O)(C)CO)C
CACTVS 3.385CCCCCC(=O)N[CH](Cc1c[nH]c2ccccc12)C(=O)N[CH](Cc3c[nH]c4ccccc34)C(=O)N[CH](Cc5ccccc5)[C]6(C)O[CH](C)[CH](N[C]6(C)CO)C=O
CACTVS 3.385CCCCCC(=O)N[C@@H](Cc1c[nH]c2ccccc12)C(=O)N[C@@H](Cc3c[nH]c4ccccc34)C(=O)N[C@@H](Cc5ccccc5)[C@]6(C)O[C@H](C)[C@H](N[C@]6(C)CO)C=O
OpenEye OEToolkits 2.0.7CCCCCC(=O)NC(Cc1c[nH]c2c1cccc2)C(=O)NC(Cc3c[nH]c4c3cccc4)C(=O)NC(Cc5ccccc5)C6(C(NC(C(O6)C)C=O)(C)CO)C
FormulaC45 H56 N6 O6
NameN-[(2S)-1-[[(2S)-1-[[(1S)-1-[(2S,3R,5S,6R)-3-(hydroxymethyl)-5-methanoyl-2,3,6-trimethyl-morpholin-2-yl]-2-phenyl-ethyl]amino]-3-(1H-indol-3-yl)-1-oxidanylidene-propan-2-yl]amino]-3-(1H-indol-3-yl)-1-oxidanylidene-propan-2-yl]hexanamide;
proteasome inhibitor CP-17
ChEMBL
DrugBank
ZINC
PDB chain8p0t Chain W Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8p0t Tv20S proteasome in the complex with marizomib
Resolution2.65 Å
Binding residue
(original residue number in PDB)
R100 A124 S125 D126 I128 A130 A132
Binding residue
(residue number reindexed from 1)
R98 A122 S123 D124 I126 A128 A130
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Biological Process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process
Cellular Component
GO:0000502 proteasome complex
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0019774 proteasome core complex, beta-subunit complex

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:8p0t, PDBe:8p0t, PDBj:8p0t
PDBsum8p0t
PubMed
UniProtA2F3H9

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