Structure of PDB 3flc Chain X Binding Site BS01

Receptor Information
>3flc Chain X (length=496) Species: 37734 (Enterococcus casseliflavus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
EKNYVMAIDQGTTSSRAIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANE
IWNSVQSVIAGAFIESGIRPEAIAGIGITNQRETTVVWDKTTGQPIANAI
VWQSRQSSPIADQLKVDGHTEMIHEKTGLVIDAYFSATKVRWLLDNIEGA
QEKADNGELLFGTIDSWLVWKLTDGQVHVTDYSNASRTMLYNIHKLEWDQ
EILDLLNIPSSMLPEVKSNSEVYGHTRSYRFYGSEVPIAGMAGDQQAALF
GQMAFEKGMIKNTYGTGAFIVMNTGEEPLSDNDLLTTIGYGINGKVYYAL
EGSIFVAGSAIQWLRDGLRMIETSPQSEELAAKAKGDNEVYVVPAFTGLG
APYWDSEARGAVFGLTRGTTKEDFVRATLQAVAYQSKDVIDTMKKDSGID
IPLLKVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYLAGLAVG
FWKDLDELKSMAEEGQMFTPEMPAEERDNLYEGWKQAVAATQTFKF
Ligand information
Ligand IDGOL
InChIInChI=1S/C3H8O3/c4-1-3(6)2-5/h3-6H,1-2H2
InChIKeyPEDCQBHIVMGVHV-UHFFFAOYSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.0C(C(CO)O)O
ACDLabs 12.01
CACTVS 3.370		OCC(O)CO
FormulaC3 H8 O3
NameGLYCEROL;
GLYCERIN;
PROPANE-1,2,3-TRIOL
ChEMBLCHEMBL692
DrugBankDB09462
ZINCZINC000000895048
PDB chain3flc Chain X Residue 507 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB3flc Structural Characterizations of Glycerol Kinase: Unraveling Phosphorylation-Induced Long-Range Activation
Resolution1.85 Å
Binding residue
(original residue number in PDB)		R84 E85 W104 Y136 D246 F271
Binding residue
(residue number reindexed from 1)		R82 E83 W102 Y134 D244 F269
Annotation score5
Enzymatic activity
Enzyme Commision number 2.7.1.30: glycerol kinase.
Gene Ontology
Molecular Function
GO:0004370 glycerol kinase activity
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0016773 phosphotransferase activity, alcohol group as acceptor
Biological Process
GO:0005975 carbohydrate metabolic process
GO:0006071 glycerol metabolic process
GO:0006072 glycerol-3-phosphate metabolic process
GO:0016310 phosphorylation
GO:0019563 glycerol catabolic process
Cellular Component
GO:0005829 cytosol

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:3flc, PDBe:3flc, PDBj:3flc
PDBsum3flc
PubMed19102629
UniProtO34153|GLPK_ENTCA Glycerol kinase (Gene Name=glpK)

[Back to BioLiP]