Structure of PDB 8rdw Chain WD Binding Site BS01

Receptor Information
>8rdw Chain WD (length=76) Species: 45610 (Psychrobacter urativorans) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SRVCQVTGKRPMVGNNVSHANNKTRRRFLPNLHHHRFWVESENRFVRLRI
STKGMRIIDKLGIDKVLVDLRAQGQK
Ligand information
>8rdw Chain Z2 (length=2729) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
gucaaguaaugaagcgcacaugguggaugccuuggcagucagaggcgaug
aaagacgugacagccugcgauaagcuucggggaggcggcaauauccugug
auccggagauuucugaauggggaaacccacuuaccauaagguagguaucu
uguacaagaagcgaacgaggggaagugaaacaucucaguacccuuaggaa
aagacaucaaaugagauuccccaaguagcggcgagcgaacggggagaagc
cgauuaaugcuaauguagaagaacagcgugggaaagcugaccguaguagg
ugauaguccuguauucgaaacauuagcguuaacauauuaaguagggcggg
acacgagaaauccugucugaagauggggggaccauccuccaaggcuaaau
acuccugacugaccgauagugaaccaguaccgugagggaaaggcgaaaag
aaccccugugaggggagugaaauagaaccugaaaccgugugcguacaagc
aguaggagccucaauuuauuggggugacugcguaccuuuuguauaauggg
ucagcgacuuauauucuguagcaagguuaaccguuuaggggagccguagg
gaaaccgagucuuaauagggcgucuaguugcaggguauagacccgaaacc
gagugaucuauccaugagcagguugaaagugccguaacaggcaccggagg
accgaacccacugucguugaaaagccaggggaugacuuguggauaggggu
gaaaggcuaaucaaacucggugauagcugguucuccccgaaagcuauuua
gguagcgccucggacgaauaccauuggggguagagcacuguuucggcuag
ggggucauaccgacuaaccgaugcaaacuccgaauaccgaugaguaauau
ccgggagacacacggcgggugcuaacguccgucguggagagggaaacaac
ccagaccgccagcuaaggccccaaauuccuaguuaagugggaaacgaggu
gggaaggcauagacagcuaggagguuggcuuagaagcagccauccuuuaa
agaaagcguaauagcucacuagucgagucggccugcgcggaagauguaac
ggggcucaaacuaggagccgaagcugcggauuugaaacuuguuuucaagu
gguaggggagcguuguguaagccugugaaggugugucguaaggcaugcug
gagguaucacaagagcgaaugcugacgugaguaacgauaaugcgagugaa
aagcucgcacgccggaagaucaaggguuccaguccaacguuaaucggggc
ugggugagucgaccccuaaggcgaggccgaaaggcguagucgaugggaaa
uugguuaauauuccaauacuuguuuauagugcgauggagggacggagaag
guuaugucagccuggcguugguuguccaggugaaaggauguaggcuuaca
guuuaggcaaauccggacuguaggcugagaucugauagcaaggaaguggc
aaauaccaugcuuccaggaaaagcuucuaaggcuauaaacgaaucguacc
cuaaaccgacacaggugaucagguagagaauaccaaggcgcuugagagaa
cucugcugaaggaacuaggcaaaaugguaccguaacuucgggagaaggua
cgcuguugauggugauaggucuccuugagcuuucgacagucgcagauacc
aggcugcugcaacuguuuauuaaaaacacagcacucugcaaacacgaaag
uggacguauagggugugaugccugcccggugcuggaagguuaauugaugg
gguuagcguaagcgaagcucuugaucgaagccccaguaaacggcggccgu
aacuauaacgguccuaagguagcgaaauuccuugucagguaaguucugac
cugcacgaauggcauaaugauggcagcgcugucuccagcagagacucagu
gaaaucgaaaucgcagugaagaugcuguguacccgcggcuagacggaaag
accccgugaaccuuuacuacagcuuuacauugaacuuggguucuaacuca
gguauaacaauaccgaggacaauguaugguggguaguuugacuggggcgg
ucuccuccuaaagaguaacggaggaguacgaaggugcgcucagaacgguc
ggaaaucguucauagaguauaaaggcaaaagcgcgcuuaacugcgagacc
cacaagucgagcagguacgaaaguaggucuuagugauccggugguucugu
auggaagggccaucgcucaacggauaaaagguacucuggggauaacaggc
ugauaccgcccaagaguucauaucgacggcgguguuuggcaccucgaugu
cggcucaucucauccuagggcugaagcagguccuaaggguauggcuguuc
gccauuuaaagagguacgcgagcuggguuuagaacgucgugagacaguuc
ggucccuaucuaccgugggcguuggaaauuugagaggaucugcuccuagu
acgagaggaccagaguggacgaaccucugguguucggguugucacgccag
uggcauugcccgguagcuacguucggaugggauaaccgcugaaagcaucu
aagcgggaagcccaccucaagauuagauuucccuaaagagccguugaaga
cuacgacguugauaggcaggguguggaagugcagcgaugcauguagcuaa
ccuguacuaauugcucguuuggcuugacc
<<<<<<<......<<<<<<<<<<<.....<<.<<<<<<<<<<<<<<....
..<<<<<<.[..(((.>>>.....<<<<<<<..<<.)))..]..>>....
.>>>>>>>...>>>....<<<....>>><<<<<<<....>>>>>>>.<<<
<<..>>>>>.>>...<<<<<<.....<<....>>......>>>>>.>...
......<<....>>..<<<<<<.....<<.....>>....>>>>>>..<<
<..<<<<<<<<<<<<<.<<<...<<<<........>>>>((......<<<
.....))>>>...>>>...>>>>>>>>>>>>>...........<<<<<<<
<.........>>>>>>>>......<<<<<..((((>>>>>..>>>.....
.>>.>>>>>>>.>>>..............<<....>>....>>.......
..<<<<.....>>>>..................>>>>>>>>>>>......
.<<<<..<<<<<<<....>>>>>>>..>>>>...<.<........>.>.<
<<<<<....<<<<<<<<<<<<<..<<<...<<.....>>...>>>...<<
....>>..<<<<.....>>>>.....>>>>>>>>>>>>>..<<.<..<<<
<<<<.....<<<<<<<<<..<<<<....<<<<<......>>>>>..>...
>>>...<<<.<<<.<........>.>>>>>>....>>>>>>>>>...<<<
.....>>>......>>>>>>...>..>.>>..<<<<<<....<<<<<...
.>>>>>.<<<<<<<....<<<<<<<<<.....<<<...<<<.<<<<....
.<<..........>>..>>>>.>>>..>>.>.....>>>>>>.>>>...>
>>>>>.>...<<<<<<<<<<......>>>>>>>>>>....<<<......>
>>...<<<<.<<<...<<<(((.....<<<<<<...........<<..<<
<<<..<<........<<<<<.<<<..<<<<.......>>>>..>>>....
....<<<......>>>..>>>>>....>>..>>>>>.>>...........
)))......>>>>>>.>>>...>>>>>>><<<<<<.<.....>.>>>>>>
....>>>>>>..<<<<<...<<<......<<<<<<<<....>>>>>>>>.
..>>>..>>>>>........>>>>>><......<<.....<<<<<<....
...>>>>>><<<<....<<<<<.<<...<<<<<<...<<.....>>.>>>
>>>....((<<<.<<<...<<<...<<<....>>>...>>>...>>>..<
<<<<........>>>>>))<<<<<<<<<<<.<...<<<<....<<<<..<
<<..<<<<<<<<<<<...[[[[...>>>>>>....<<<<...<<<<<<<<
<<<..<<.....>>.>>>>>>>>>>>...>>>>.............>>>>
>...>>>...>>>>.........>>>>...>>>>>>>>>>>>.>>>..>>
.....<<......>>>>>>>.<<<<.....>>>>..>>>>..<<<<....
<<<<<<<<.<<...............<<<<<...............>>>>
><<<<<<<<.<<<...<<<...>>>...>>>.>>>>>>>>..........
..<<<<<<<<<..<<<.........>>>..<<<<<<<.....<<<....>
>>.......>>>>>>>.<<<<<.<<<..<<<<<<<..<<<....<...<<
<<<<.<<....>>..>>>>>>..>.....>>>>>>>>..>>>>><<<<<<
.......>>>>>>........<...........<<<<<<.....>>>>>>
.....>....>>>>>..>>.>>>>>>>.....>>.>>>>>>>>.>>>>>>
.....>.....<<<<<........>>>>>..<<<<<<<.<<<<.<<....
..<<<<.<<<<<<..<<<<<.<<<.<<<<<.<<<<<..>>>>>...<<<.
<<<<<....>>>>>>>>....>>>>>.>>>..>>>>>..<<<<.....>>
>><<<<<<...........>>>>>>..<<...<<<<<<<...<<<<<<..
.....>>>>>>.....<<.[.(((>>....>>>>>>>...<<<<..<<<.
.....>>>..>>>>.<<<....>>>.>>)))]......<<<<<<<.<<..
))))..>>>>>>>>>.............>>>>..>>>>>>.......<<<
<...<<<<<<...<<.......>>...>>>>>>....>>>.>.......<
<<<<.<<<<<<..<<<<<<<<<......>>>>>>..>>>.<<<<<.....
>>>>>.....>>>>>..>...>>>.>>....<<<<<<<....>>>.>>>>
....>>..>>>>>>>>>>>....<<<<<<<...<<<<..<<<<<<.....
............>>>>>>.<<<<<...<<<<...<<<<<<<<<<<]]]]>
>>>>>..>>>>>...>>>>.>>>>>...<<<....<<<<<..........
.>>>>>....>>>.>>>>.......>>>>>>>.....<<<<<<<<<....
...>>>>>....<<<<<<<<..<<....<<<<<....>>>>>...>>...
>>>>>.>>>...>>>>.....>>>>>>>.
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8rdw A new family of bacterial ribosome hibernation factors
Resolution2.74 Å
Binding residue
(original residue number in PDB)
S2 R3 K10 M13 V14 N16 S19 H20 A21 N22 N23 K24 R26 R27 R28 F29 L30 P31 N32 H34 H36 R37 R50 T53 M56 R57 K61 L62
Binding residue
(residue number reindexed from 1)
S1 R2 K9 M12 V13 N15 S18 H19 A20 N21 N22 K23 R25 R26 R27 F28 L29 P30 N31 H33 H35 R36 R49 T52 M55 R56 K60 L61
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:8rdw, PDBe:8rdw, PDBj:8rdw
PDBsum8rdw
PubMed38355796
UniProtA0A0M4T6Y7

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