Structure of PDB 9gd2 Chain W Binding Site BS01

Receptor Information

>9gd2 Chain W (length=641) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

GIDIVINHRLLNNCKENYEFLIKWTDESHLHNTWETYESIGQVRGLKRLD
NYCKQFIIEDQQVRLDPYVTAEDIEIMDMERERRLDEFEEFHVPERIIDS
QRASLEDGTSQLQYLVKWRRLNYDEATWENATDIVKLAPEQVKHFQNREN
SKILPQYSSNYTSQRPRFEKLSVQPPFIKGGELRDFQLTGINWMAFLWSK
GDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDT
FEKWAPDLNCICYMGNQKSRDTIREYEFYTNPKTMKFNVLLTTYEYILKD
RAELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNN
IKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRL
KKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGFSLLNIMN
ELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQL
LTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRIS
IDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMA
RAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAII

Ligand information

>9gd2 Chain I (length=237) [Search DNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

gagaatcccggtgccgaggccgctcaattggtcgtagacagctctagcac
cgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaagggga
ttactccctagtctccagggaattcctcaattggtcgtagacagctctag
caccgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaagg
ggattactccctagtctccaggcacgtgtcagatata

Receptor-Ligand Complex Structure

Global view

Local view

Structure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

PDB	9gd2 Resolution of transcription-induced hexasome-nucleosome complexes by Chd1 and FACT.
Resolution	4.2 Å
Binding residue (original residue number in PDB)	N459 E493 Y494 M720 V721 G743 R750 S770 R772 A773
Binding residue (residue number reindexed from 1)	N266 E295 Y296 M517 V518 G540 R547 S567 R569 A570

External links

PDB	RCSB:9gd2, PDBe:9gd2, PDBj:9gd2
PDBsum	9gd2
PubMed	39270644
UniProt	P32657\|CHD1_YEAST Chromo domain-containing protein 1 (Gene Name=CHD1)

[Back to BioLiP]