Structure of PDB 8wb4 Chain V Binding Site BS01
Receptor Information
>8wb4 Chain V (length=131) Species:
173977
(Chroomonas placoidea) [
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TRTVPLDSSGTTVILTPEQVKRGKRLFNSSCGNCHVGGITKTNPNLGLEP
DALSLATPARDNIDALVDYMKNPTTYDGLESIAELHPSVKSADIFPKMRS
LSDEDLFAIGGHILLQPKLSSEKWGGGKIYY
Ligand information
Ligand ID
HEM
InChI
InChI=1S/C34H34N4O4.Fe/c1-7-21-17(3)25-13-26-19(5)23(9-11-33(39)40)31(37-26)16-32-24(10-12-34(41)42)20(6)28(38-32)15-30-22(8-2)18(4)27(36-30)14-29(21)35-25;/h7-8,13-16H,1-2,9-12H2,3-6H3,(H4,35,36,37,38,39,40,41,42);/q;+2/p-2/b25-13-,26-13-,27-14-,28-15-,29-14-,30-15-,31-16-,32-16-;
InChIKey
KABFMIBPWCXCRK-RGGAHWMASA-L
SMILES
Software
SMILES
OpenEye OEToolkits 1.7.6
Cc1c2n3c(c1CCC(=O)O)C=C4C(=C(C5=[N]4[Fe]36[N]7=C(C=C8N6C(=C5)C(=C8C)C=C)C(=C(C7=C2)C)C=C)C)CCC(=O)O
CACTVS 3.385
CC1=C(CCC(O)=O)C2=Cc3n4[Fe]5|6|N2=C1C=c7n5c(=CC8=N|6C(=Cc4c(C)c3CCC(O)=O)C(=C8C=C)C)c(C)c7C=C
ACDLabs 12.01
C=1c3c(c(c4C=C5C(=C(C=6C=C7C(=C(C8=CC=2C(=C(C=1N=2[Fe](n34)(N5=6)N78)CCC(=O)O)C)\C=C)C)\C=C)C)C)CCC(=O)O
Formula
C34 H32 Fe N4 O4
Name
PROTOPORPHYRIN IX CONTAINING FE;
HEME
ChEMBL
DrugBank
DB18267
ZINC
PDB chain
8wb4 Chain V Residue 201 [
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Receptor-Ligand Complex Structure
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PDB
8wb4
Structure and distinct supramolecular organization of a PSII-ACPII dimer from a cryptophyte alga Chroomonas placoidea.
Resolution
2.47 Å
Binding residue
(original residue number in PDB)
C63 C66 H67 T74 N75 L78 G79 L80 L85 Y101 M102 I114 H118 P119
Binding residue
(residue number reindexed from 1)
C31 C34 H35 T42 N43 L46 G47 L48 L53 Y69 M70 I82 H86 P87
Annotation score
4
Enzymatic activity
Enzyme Commision number
?
External links
PDB
RCSB:8wb4
,
PDBe:8wb4
,
PDBj:8wb4
PDBsum
8wb4
PubMed
38806516
UniProt
A0A222AI35
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