Structure of PDB 8kd7 Chain V Binding Site BS01

Receptor Information
>8kd7 Chain V (length=92) Species: 8355 (Xenopus laevis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRL
AHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYT
Ligand information
>8kd7 Chain X (length=153) [Search DNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
tctagaacaggatgtatatatctgacacgtgcctggagactagggagtaa
tccccttggcggttaaaacgcgggggacagcgcgtacgtgcgtttaagcg
gtgctagagctgtctacgaccaattgagcggcctcggcaccgggattctc
cag
Receptor-Ligand Complex Structure
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PDB8kd7 Structural basis of nucleosome deacetylation and DNA linker tightening by Rpd3S histone deacetylase complex.
Resolution3.09 Å
Binding residue
(original residue number in PDB)		R30 Y39 S52 S53 R83
Binding residue
(residue number reindexed from 1)		R3 Y12 S25 S26 R56
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0005515 protein binding
GO:0030527 structural constituent of chromatin
GO:0046982 protein heterodimerization activity
Cellular Component
GO:0000786 nucleosome
GO:0005634 nucleus
GO:0005694 chromosome

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Molecular Function
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Cellular Component
External links
PDB RCSB:8kd7, PDBe:8kd7, PDBj:8kd7
PDBsum8kd7
PubMed37666978
UniProtP02281|H2B11_XENLA Histone H2B 1.1

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