Structure of PDB 8d8l Chain V Binding Site BS01

Receptor Information
>8d8l Chain V (length=233) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GKGAAKYGFKSGVFPTTRSILKSPTTKQTDIINKVKSPKPKGVLGIGYAK
GVKHPKGSHRLSPKVNFIDVDNLIAKTVAEPQSIKSSNGSAQKVRLQKAE
LRRKFLIEAFRKEEARLLHKHEYLQKRTKELEKAKELELEKLNKEKSSDL
TIMTLDKMMSQPLLRNRSPEESELLKLKRNYNRSLLNFQAHKKKLNELLN
LYHVANEFIVTESQLLKKIDKVFNDETEEFTDA
Ligand information
>8d8l Chain a (length=1506) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uaagaauaugauguugguucagauuaagcgcuaaauaaggacaugacaca
ugcgaaucauacguuuauuauugagauaauaaauaugugguguaaacgug
aguaauuuuauuaggaauuaaugaacuauagaauaagcuaaauacuuaau
auuauauaaaaauaauuuauauaauaaaaaggauauauauauauauauuu
aucuauagucaagccaauaaugguuuagguaguagguuuauuaagaguua
aaccuagccaacgauccauaaucgauaaugaaaguuagaacgaucacguu
gacucugaaauauagucaauaucuauaagauacagcagugaggaauauug
gacaaugaucgaaagauugauccaguuacuuauuaggaugauauauauau
auauauaaauugauuaaaaauaaaauccauaaauaauuaaaauaaugaua
uuaauuaccauauauuuauauggauauauauauauuuuaauaguccugac
uaauauuugugccagcagucgcgguaacacaaagagggcgagcguuaauc
auaaugguuuaaaggauccguagaaugaauuauauauaauuuagaguuaa
uaaaauauaauuaaagaauuauaauaguaaagaugaaauaauaauaauaa
uuauaagacuaauauaugugaaaauauuaauuaaauauuaacugacauug
agggauuaaaacuagaguagcgaaacggauucgauacccguguaguucua
guaguaaacuaugaauacaauuauuuauaauauauauauaaauaauaaau
gaaaaugaaaguauuccaccugaagaguacguuagcaauaaugaaacuca
aaacaauagacgguuacagacuuaagcaguggagcauguuauuuaauucg
auaauccacgacuaaccuuaccauauuuugaauauuauaauaauuauaau
uauuauauuacaggcguuacauuguugucuuuaguucgugcugcaaaguu
uuagauuaaguucauaaacgaacaaaacuccauauauauaauuuuaauua
uauauaauuuuauauuauuuauuaauauaaagaaaggaauuaagacaaau
cauaaugauccuuauaauauggguaauagacgugcuauaauaaaaugaua
auaaaauuauauaaaauauauuuaauuauauuuaauuaauaauauaaaac
auuuuaauuuuuaauauauuuuuuuauuauaauaugaauuauaaucugaa
auucgauuauaugaaaaaagaauugcuaguaauacguaaauuaguauguu
acggugaauauucuaacuguuucgcacuaaucacucaucacgcguugaaa
cauauuauuaucuuauuauuuauauaauauuuuuuaauaaauauuauuaa
uuuauauuuauuuauaucagaaauaauaugaauuaaugcgaaguugaaau
acaguuaccguaggggaaccugcggugggcuuauaaauaucuuaaauauu
cuuaca
...<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<......<<<.
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.......<<<<<.<<.........<<<<<<<<.<<<<.......>>>>..
.<<<<<<<<<.....>>>>>>>>>......<<<<<<<<<..>>>>>>>>>
.>>>>>>>>....>>>>>>><<<....<<<..<<<<<<<<........>>
>>>>>>>>>......>>>..<<<<.<<<<....>>>>...>>>>.>>><<
<<<<.........>>>>>><<<<.....>>>>..>>>>>>.........<
<<...<<<<<....>>>>.>>>>...>.>>>>>>.<<<<..<<<<<<...
.>>>>>>..<<......>>.....>>>>..<<<<<<<<............
..>>>>><<<<<<<..>>>>>>>.<<<<..>>>>.>>>....<<<<<(((
.....<<<<.....<<.)))>>.......>>>>.>>>>>..>>>>>>>>>
.....<<<((.....<<<<...<.<<.<<<<<<..>>>>>>...<<<<<<
<<.....<<<<<<<<<..<<<<<<<....<...........>.......>
>>>>>>..>>.......<<....>>.>>>>>>>..>>>>>>>>...>>>.
..>>>>....<<<<<<...<<...<<<<.<.....>.>>>>...>>>>>>
>>..........<<<<<<.<<<<<<<<<<<<..>>.>>>>>>>>>>..<<
..))>>....>>>>>>.>>>.<<.......<<<<....>>>>.....>>.
.)))).]<<.<<...<<<<......<<<<<..<<<<<<<<<<........
....................<<<<<<<.....<<.<<<<<<<<<<..>>>
>>>>>>>.>>.<<<.<<..<<<<<<<<<<<<..<<<<<<<<<....>>>.
...<<......>>....>>>>>>.....<<<.<<<<<<<<........>>
>>>>>>..<<<<<<<<<.....>>>>>>>>>....>>>...>>>>>>>..
..>>>>>>>>>>...>>>>>>>...>>.>>>>>>>>.....<<<<<<...
.....<<<..<<..<<<<<<......>>>>>>..>>....>>>......>
>>>>>......<<<<<.<....>.>>>>>.....<....<<<<<<<....
....>>>>>>>....>.....>>>>>.....<<.<<<<<.........>>
>>>>>...........>>>>..>>..>>....<.<<<.<.<<<<<<<<..
<<<<<<<<<.<<<...<<<..<<<.<<<<<...<<<<<<<...>>>>>>>
...>>>>>>>>..>>>..>>>>>>>>>>>>..>>>>>>>>..>.>>.>.>
.....<<<<<<<<<....>>>>>>>>>.......................
......
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8d8l Principles of mitoribosomal small subunit assembly in eukaryotes.
Resolution2.6 Å
Binding residue
(original residue number in PDB)		G2 K3 G4 A5 Y8 K11 S12 G13 V14 R19 K23 K37 K51 S59 H60 L62 S63 P64 K65 V66 F68 T78 V79 A80 P82 N89 G90 S91 A92 Q93 A100 R103 R104 R168 R180 N183 L187 K194
Binding residue
(residue number reindexed from 1)		G1 K2 G3 A4 Y7 K10 S11 G12 V13 R18 K22 K36 K50 S58 H59 L61 S62 P63 K64 V65 F67 T77 V78 A79 P81 N88 G89 S90 A91 Q92 A99 R102 R103 R167 R179 N182 L186 K193
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0032543 mitochondrial translation
Cellular Component
GO:0005739 mitochondrion
GO:0005743 mitochondrial inner membrane
GO:0005763 mitochondrial small ribosomal subunit
GO:0005840 ribosome
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8d8l, PDBe:8d8l, PDBj:8d8l
PDBsum8d8l
PubMed36482135
UniProtP17558|RTPT_YEAST Small ribosomal subunit protein mS26 (Gene Name=PET123)

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