Structure of PDB 7qix Chain V Binding Site BS01

Receptor Information
>7qix Chain V (length=68) Species: 4081 (Solanum lycopersicum) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VLPNDVDLLNPPAEHEKKKHKLKRLVQSPNSFFMDVTTVFSHSQTVVVLC
QPTGGRARLIEGCSFRRK
Ligand information
>7qix Chain 2 (length=1110) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uaccugguugauccugccaguagucauaugcuugucucaaagauuaagcc
augcauguguaaguaugaacaaauagacugugaaacugcgaauggcucau
uaaaucaguuauaguuuguuugaugguuacucggauaaccguaguaauuc
uagagcuaauacgugcaccccgaaagggaugcauuuauuagauagcgaug
auucaugauaacucgacggaucgcacggccgccggcgacgcaucauucaa
auuucugcccuaucaacuuucgaugguaggauaguggccuaccauggugg
ugacgggugacggagaauuaggguucgauuccggagagggagccugagaa
acggcuaccacauccaaggaaggcagcaggcgcgcaaauuacccaauccu
gacacggggagguagugacaauaaauaacaauaccgggagucugguaauu
ggaaugaguacaaucuaaaucccuuaacgaggauccauuggagggcaagu
cuggugccagcagccgcgguaauuccagcuccaauagcguauauuuaagu
uguugcaguuaaaaagcucguaguuggacuuuguguuacuuugaagaaau
uagagugcucaaagcaagccuacgcucuguauacauuagcaugggauaac
auuauaggauuucgguccuaugggaucggaguaaugauuaacagggacag
ucgggggcauucguauuucauagucagaggugaaauucuuggauuuauga
aagacgaacaacugcgaaagcauuugccaaggauguuuucauuaaucaag
aacgaaaguugggggcucgaagacgaucagauaccguccuagucucaacc
auaaacgaugccgaccagggaucggcggauguugcuaggacuccgccggc
accuuaugagaaaucaaaguuuuuggguuccggggggaguauggucgcaa
ggcugaaacuuaaaggaaggagcgcccgucgcuccuaccgauugaaugau
ccggugaaauguucggaucgcggucgcgagaaguccauugaaccuuauca
uuuagaggaaggagaagucguaacaagguuuccguaggugaaccugcgga
aggaucauug
...<<<<<...((((>>>>>.<<<.<<<<<<...<.<...<......<<<
.<<<..<<....<<....<<.........>>...>>.>>......<<...
.....<<<..<<..<<....<<<<<......<<.....<..<<<.....>
>>..>......>>.....<<<....>>>......<<<<<<..........
.....>>>>>>.........<<<<.<<<<.>>>>>>>>..>>>>>...>>
>>..>>>.<<<....<<<....<<<<<<<<.......>>>>>>>>>>>..
....>>>...<<<.<<<<....>>>>....>>>.>>.<<.<<<.......
...>>>.>>.<.<<....>>.>...>>>>>>.........<<<....<<<
.....>>>..>>>..>....>.>.....<<<<<<<<<<..>>>>>>>.>>
>......<<..<...........>..>>.........<<<<<((......
<<<<.....<<..))>>.......>>>>.>>>>>..>>>>>>>>>.....
.....<.<((.....<.<<...<<<.<<......<<<<<<.<<.......
<<...<.......>..<<<....>>>.....>>......>>.>>..>>>>
........<<<<<<<<<<<..>>>>>>>>>>>.....>>....<<<<<<.
<<...<<<<..<<..<<<<<<<<...<<<......>>>......>>>>>>
>>..>>.......<<....>>...>>>>...>>>>>.>>>...>>>...>
>.>....<<<<<<<...<...<<<<.<.....>.>>>>...>>>>>>>>.
.........<<<.<<.<<<..<<<<<<<<.<<<.<<>>>>>>>>>>>>>.
.>>>...<<..))>>...>>.....>>>.>.>.<<<......<<<<....
>>>>....>>>..)))).........<<.<.<<<<<.<<....<<<<<<<
..<<<..<<<<..<...<<<<<..>>>>>...>..>>>>..>>>..>>>>
>>>...>>.>>>>>..>.>>.........<<<<<<<<<....>>>>>>>>
>.........
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB7qix Cryo-EM structure and rRNA modification sites of a plant ribosome.
Resolution2.53 Å
Binding residue
(original residue number in PDB)		K19 H21 K22 L23 K24 Q28 P30 S32 F49 H51 Q53 T69 G70 G71 R72 E77
Binding residue
(residue number reindexed from 1)		K18 H20 K21 L22 K23 Q27 P29 S31 F40 H42 Q44 T53 G54 G55 R56 E61
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Fri Nov 15 17:32:05 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '7qix', asym_id = 'V', bs = 'BS01', title = 'Cryo-EM structure and rRNA modification sites of a plant ribosome.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='7qix', asym_id='V', bs='BS01', title='Cryo-EM structure and rRNA modification sites of a plant ribosome.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003735,0005840,0006412', uniprot = '', pdbid = '7qix', asym_id = 'V'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412', uniprot='', pdbid='7qix', asym_id='V')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>