Structure of PDB 7c08 Chain V Binding Site BS01

Receptor Information
>7c08 Chain V (length=174) Species: 284812 (Schizosaccharomyces pombe 972h-) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VNCSFYYKIGACRHGERCYRKHVKPNFSQTILCPNMYKNPIHGKKFTQRE
LAEQFDAFYEDMFCEFSKYGEVEQLVVCDNVGDHLVGNVYVRFKYEESAQ
NAIDDLNSRWYSQRPVYAELSPVTDFREACCRQHETSECQRGGLCNFMHA
KKPSPQLLRDLVLAQRKYLALNAA
Ligand information
Receptor-Ligand Complex Structure
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PDB7c08 Elucidation of the aberrant 3' splice site selection by cancer-associated mutations on the U2AF1.
Resolution3.35 Å
Binding residue
(original residue number in PDB)		V16 F20 H29 C33 Y34 R35 E146 C148 R159 C163 N164 F165
Binding residue
(residue number reindexed from 1)		V1 F5 H14 C18 Y19 R20 E128 C130 R141 C145 N146 F147
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding
GO:0003723 RNA binding
GO:0005515 protein binding
GO:0030628 pre-mRNA 3'-splice site binding
GO:0046872 metal ion binding
Biological Process
GO:0000389 mRNA 3'-splice site recognition
GO:0000398 mRNA splicing, via spliceosome
GO:0006397 mRNA processing
GO:0008380 RNA splicing
GO:0045292 mRNA cis splicing, via spliceosome
Cellular Component
GO:0000243 commitment complex
GO:0005634 nucleus
GO:0005681 spliceosomal complex
GO:0005829 cytosol
GO:0071004 U2-type prespliceosome
GO:0089701 U2AF complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:7c08, PDBe:7c08, PDBj:7c08
PDBsum7c08
PubMed32958768
UniProtQ09176|U2AF1_SCHPO Splicing factor U2AF 23 kDa subunit (Gene Name=SPAP8A3.06)

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