Structure of PDB 6zqb Chain UG Binding Site BS01 |
| >6zqb Chain UG (length=533) Species: 559292 (Saccharomyces cerevisiae S288C)
[Search protein sequence]
[Download receptor structure]
[Download structure with residue number starting from 1]
[View receptor structure]
|
KERENQNKFERSTYQTKDKKLRAGLKKIDEQYKKAVSSAAATDYLLPESN
GYLEPENELEKTFKVQQSEIKSSVDVSTANKALDLSLKEFGPYHIKYAKN
GTHLLITGRKGHVASMDWRKGQLRAELFLNETCHSATYLQNEQYFAVAQK
KYTFIYDHEGTELHRLKQHIEARHLDFLPYHYLLVTAGETGWLKYHDVST
GQLVSELRTKAGPTMAMAQNPWNAVMHLGHSNGTVSLWSPSMPEPLVKLL
SARGPVNSIAIDRSGYYMATTGADRSMKIWDIRNFKQLHSVESLPTPGTN
VSISDTGLLALSRGPHVTLWKDALKLSGDSKPCFGSMGGNPHRNTPYMSH
LFAGNKVENLGFVPFEDLLGVGHQTGITNLIVPGAGEANYDALELNPFET
KKQRQEQEVRTLLNKLPADTITLDPNSIGSVDKRSSTIRLNAKDLAQTTM
DANNKAKTNSDIPDVKPDVKGKNSGLRSFLRKKTQNVIDERKLRVQKQLD
KEKNIRKRNHQIKQGLISEDHKDVIEEALSRFG |
|
| >6zqb Chain D2 (length=522)
[Search RNA sequence]
[Download ligand structure]
[Download structure with residue number starting from 1]
[View ligand structure]
|
ugcgaaagcaguugaagacaagugcuugucguucguuaaaauggccucgu
caaacgguggagagagucgcuaggugaucgucagaucugccuagucucua
uacagcguguuuaauugacauggguugaugcguauugagagauacaauuu
gggaagaaauucccagaguguguuucuuuugcguuuaaccugaacagucu
caucgugggcaucuugcgauuccauuggugagcagcgaaggauuuggugg
auuacuagcuaauagcaaucuauuucaaagaauucaaacuugggggaaug
ccuuguugaauagccggucgcaagacugugauucuucaaguguaaccucc
ucucaaaucagcgauaucaaacguaccccgugaaacaccgggguaucugu
uugguggaaccugauuagaggaaacucaaagagugcuaugguauggugac
ggagugcgcuggucaagaguguaaaagcuuuuugaacagagagcauuucc
ggcagcagagauuucagcuguu |
<<<....>>>...<<<<<<<<<..>>>>>>.>>>..............<<
<<<<<<.<<...<<<<..<<<<<<<<<<<....>>>>.>>>>>>>>>>>.
..>>.>>>......>>>>>..<<<<<...<<<<<..<<<<<.<<<<.<<<
<<<<<....>>>>>>>>.>>>>.>>>>>.>>>>>..>>>>>.......<<
<<<<<<<<<...........>>>>>.>>>>>>..................
.......<<<...>>>.........................<<<<<..<<
<<<<<..<<<....<<<<<....>>>>>...>>>..>>>>.>>.>>>>>>
.....<<<<<<....<<<<<<<.<<<<<<<........>>>>>>>...>>
>>>>>.....>>>>>>.................................<
<<<<<<<.<<<.<<<<<<<<......>>>>.>>>>.>>>...>>>>.>>>
><<<<<.<<<..>>>.>>>>>. |
|
| Global view | Local view | Structure summary |
[Spin on]
[Spin off]
[Reset]
[High quality]
[Low quality]
[White background]
[Black background]
|
[Spin on]
[Spin off]
[Reset]
[High quality]
[Low quality]
[White background]
[Black background]
|
| PDB | 6zqb 90 S pre-ribosome transformation into the primordial 40 S subunit. |
| Resolution | 3.9 Å |
Binding residue
(original residue number in PDB) | K85 Q143 H179 I191 T211 W213 K215 L224 E227 R229 K231 R274 E313 H337 F355 G356 S357 M358 G359 G360 R364 A374 R425 Q426 D485 K487 K493 N494 G496 L497 R498 R502 K503 K524 R527 H531 |
Binding residue
(residue number reindexed from 1) | K64 Q122 H158 I170 T190 W192 K194 L203 E206 R208 K210 R253 E292 H316 F334 G335 S336 M337 G338 G339 R343 A353 R404 Q405 D464 K466 K472 N473 G475 L476 R477 R481 K482 K503 R506 H510 |
|
|
| Enzyme Commision number |
? |
|
|
Biological Process |
| GO:0000447 |
endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
| GO:0000462 |
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
| GO:0000472 |
endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
| GO:0000480 |
endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
| GO:0006364 |
rRNA processing |
| GO:0030490 |
maturation of SSU-rRNA |
| GO:0042254 |
ribosome biogenesis |
|
|
|
